Evidence map›Paper›PMID 38205021›Full record

ArticleACS catalysis2024

Deconvoluting Nonlinear Catalyst-Substrate Effects in the Intramolecular Dirhodium-Catalyzed C-H Insertion of Donor/Donor Carbenes Using Data Science Tools.

Lucas W Souza, Beck R Miller, Ryan C Cammarota, Anna Lo, Ixchel Lopez, Yuan-Shin Shiue, Benjamin D Bergstrom, Sarah N Dishman, James C Fettinger, Matthew S Sigman and 1 more

Abstract read
In one paragraph

Article in ACS catalysis, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lucas W SouzaDepartment of Chemistry, University of California, Davis, California 95616, United States.ORCID https://orcid.org/0000-0003-0446-7970
Beck R MillerDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States.
Ryan C CammarotaDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States.ORCID https://orcid.org/0000-0002-3089-9534
Anna LoDepartment of Chemistry, University of California, Davis, California 95616, United States.ORCID https://orcid.org/0000-0002-4489-3109
Ixchel LopezDepartment of Chemistry, University of California, Davis, California 95616, United States.
Yuan-Shin ShiueDepartment of Chemistry, University of California, Davis, California 95616, United States.
Benjamin D BergstromDepartment of Chemistry, University of California, Davis, California 95616, United States.
Sarah N DishmanDepartment of Chemistry, University of California, Davis, California 95616, United States.ORCID https://orcid.org/0000-0003-3110-5828
James C FettingerDepartment of Chemistry, University of California, Davis, California 95616, United States.ORCID https://orcid.org/0000-0002-6428-4909
Matthew S SigmanDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States.ORCID https://orcid.org/0000-0002-5746-8830
Jared T ShawDepartment of Chemistry, University of California, Davis, California 95616, United States.ORCID https://orcid.org/0000-0001-5190-493X

Funding

Synthesis of Diverse Natural Products and Complex Heterocycles with Donor/Donor CarbenoidsR01GM124234 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHAW, JARED THOMAS · 2018 to 2021
$1.3M
NIGMS NIH HHS R01 GM124234
6 · The paper itself

Abstract

Interactions between catalysts and substrates can be highly complex and dynamic, often complicating the development of models to either predict or understand such processes. A dirhodium(II)-catalyzed C-H insertion of donor/donor carbenes into 2-alkoxybenzophenone substrates to form benzodihydrofurans was selected as a model system to explore nonlinear methods to achieve a mechanistic understanding. We found that the application of traditional methods of multivariate linear regression (MLR) correlating DFT-derived descriptors of catalysts and substrates leads to poorly performing models. This inspired the introduction of nonlinear descriptor relationships into modeling by applying the sure independence screening and sparsifying operator (SISSO) algorithm. Based on SISSO-generated descriptors, a high-performing MLR model was identified that predicts external validation points well. Mechanistic interpretation was aided by the deconstruction of feature relationships using chemical space maps, decision trees, and linear descriptors. Substrates were found to have a strong dependence on steric effects for determining their innate cyclization selectivity preferences. Catalyst reactive site features can then be matched to product features to tune or override the resultant diastereoselectivity within the substrate-dictated ranges. This case study presents a method for understanding complex interactions often encountered in catalysis by using nonlinear modeling methods and linear deconvolution by pattern recognition.

Identifiers

PMID38205021
PMCPMC10775150

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.