Evidence map›Paper›PMID 38204420›Full record

ArticleMolecular microbiology2024

TbsP and TrmB jointly regulate gapII to influence cell development phenotypes in the archaeon Haloferax volcanii.

Rylee K Hackley, Sungmin Hwang, Jake T Herb, Preeti Bhanap, Katie Lam, Angie Vreugdenhil, Cynthia L Darnell, Mar Martinez Pastor, Johnathan H Martin, Julie A Maupin-Furlow and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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  9. MinD proteins regulate CetZ1 localization inFrontiers in microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Rylee K HackleyBiology Department, Duke University, Durham, North Carolina, USA.
Sungmin HwangBiology Department, Duke University, Durham, North Carolina, USA.
Jake T HerbBiology Department, Duke University, Durham, North Carolina, USA.
Preeti BhanapBiology Department, Duke University, Durham, North Carolina, USA.
Katie LamBiology Department, Duke University, Durham, North Carolina, USA.
Angie VreugdenhilBiology Department, Duke University, Durham, North Carolina, USA.
Cynthia L DarnellBiology Department, Duke University, Durham, North Carolina, USA.
Mar Martinez PastorBiology Department, Duke University, Durham, North Carolina, USA.
Johnathan H MartinDepartment of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, Florida, USA.
Julie A Maupin-FurlowDepartment of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, Florida, USA.ORCID 0000-0001-6105-0923
Amy K SchmidBiology Department, Duke University, Durham, North Carolina, USA.ORCID 0000-0001-5821-8000
Duke University · USUniversity of Florida · US

Funding

Ubiquitin-like Small Archaeal Protein Modification (SAMPylation)R01GM057498 · NIGMS · UNIVERSITY OF FLORIDA · PI MAUPIN-FURLOW, JULIE A · 2000 to 2024
$4.9M
NIGMS NIH HHS R01 GM057498NIH HHS NIH R01 GM57498
6 · The paper itself

Abstract

Microbial cells must continually adapt their physiology in the face of changing environmental conditions. Archaea living in extreme conditions, such as saturated salinity, represent important examples of such resilience. The model salt-loving organism Haloferax volcanii exhibits remarkable plasticity in its morphology, biofilm formation, and motility in response to variations in nutrients and cell density. However, the mechanisms regulating these lifestyle transitions remain unclear. In prior research, we showed that the transcriptional regulator, TrmB, maintains the rod shape in the related species Halobacterium salinarum by activating the expression of enzyme-coding genes in the gluconeogenesis metabolic pathway. In Hbt. salinarum, TrmB-dependent production of glucose moieties is required for cell surface glycoprotein biogenesis. Here, we use a combination of genetics and quantitative phenotyping assays to demonstrate that TrmB is essential for growth under gluconeogenic conditions in Hfx. volcanii. The ∆trmB strain rapidly accumulated suppressor mutations in a gene encoding a novel transcriptional regulator, which we name trmB suppressor, or TbsP (a.k.a. "tablespoon"). TbsP is required for adhesion to abiotic surfaces (i.e., biofilm formation) and maintains wild-type cell morphology and motility. We use functional genomics and promoter fusion assays to characterize the regulons controlled by each of TrmB and TbsP, including joint regulation of the glucose-dependent transcription of gapII, which encodes an important gluconeogenic enzyme. We conclude that TrmB and TbsP coregulate gluconeogenesis, with downstream impacts on lifestyle transitions in response to nutrients in Hfx. volcanii.

Indexed as

Archaeal ProteinsHaloferax volcaniiGlucoseMembrane GlycoproteinsMetabolic Networks and PathwaysPhenotypeArchaeal ProteinsGlucoseMembrane GlycoproteinsArchaeacell morphologycentral metabolismgene regulatory networkgluconeogenesisHaloferax volcaniitranscription factor

Identifiers

PMID38204420
PMCPMC11023807
OpenAlexW4390743110

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.