Evidence map›Paper›PMID 38203827›Full record

ArticleInternational journal of molecular sciences2024

Differential Response of MYB Transcription Factor Gene Transcripts to Circadian Rhythm in Tea Plants (

Zhihang Hu, Nan Zhang, Zhiyuan Qin, Jinwen Li, Ni Yang, Yi Chen, Jieyu Kong, Wei Luo, Aisheng Xiong, Jing Zhuang

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Zhihang HuTea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0009-0007-3428-8013
Nan ZhangState Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing 210095, China.
Zhiyuan QinTea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Jinwen LiTea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Ni YangTea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Yi ChenTea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Jieyu KongTea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Wei LuoTea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Aisheng XiongState Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-7900-5001
Jing ZhuangTea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0001-6960-5217
Nanjing Agricultural University · CN

Funding

Collection and Creation of Horticultural Crop Germplasm Resources of Jiangsu JSFEM-202212National Natural Science Foundation of China 31870681Priority Academic Program Development of Jiangsu Higher Education Institutions Project PAPDProvincial Policy Guidance Program North Jiangsu Science and Technology Special Project SZ-LYG202126
6 · The paper itself

Abstract

The circadian clock refers to the formation of a certain rule in the long-term evolution of an organism, which is an invisible 'clock' in the body of an organism. As one of the largest TF families in higher plants, the MYB transcription factor is involved in plant growth and development. MYB is also inextricably correlated with the circadian rhythm. In this study, the transcriptome data of the tea plant 'Baiyeyihao' were measured at a photoperiod interval of 4 h (24 h). A total of 25,306 unigenes were obtained, including 14,615 unigenes that were annotated across 20 functional categories within the GO classification. Additionally, 10,443 single-gene clusters were annotated to 11 sublevels of metabolic pathways using KEGG. Based on the results of gene annotation and differential gene transcript analysis, 22 genes encoding MYB transcription factors were identified. The G10 group in the phylogenetic tree had 13 members, of which 5 were related to the circadian rhythm, accounting for 39%. The G1, G2, G8, G9, G15, G16, G18, G19, G20, G21 and G23 groups had no members associated with the circadian rhythm. Among the 22 differentially expressed MYB transcription factors, 3 members of LHY, RVE1 and RVE8 were core circadian rhythm genes belonging to the G10, G12 and G10 groups, respectively. Real-time fluorescence quantitative PCR was used to detect and validate the expression of the gene transcripts encoding MYB transcription factors associated with the circadian rhythm.

Indexed as

Camellia sinensisCircadian ClocksCircadian RhythmHumansPhylogenyTeaTeaCamellia sinensiscircadian rhythmMYBtranscription factortranscriptome analysis

Identifiers

PMID38203827
PMCPMC10780195
OpenAlexW4390601562

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.