Evidence map›Paper›PMID 38203678›Full record

ArticleInternational journal of molecular sciences2023

RNA Pol II Assembly Affects ncRNA Expression.

Ana I Garrido-Godino, Ishaan Gupta, Vicent Pelechano, Francisco Navarro

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Ana I Garrido-GodinoDepartamento de Biología Experimental-Genética, Universidad de Jaén, Paraje de las Lagunillas, s/n, E-23071 Jaén, Spain.ORCID 0000-0002-7389-1372
Ishaan GuptaGenome Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstraße 1, 69117 Heidelberg, Germany.
Vicent PelechanoSciLifeLab, Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, 171 65 Solna, Sweden.
Francisco NavarroDepartamento de Biología Experimental-Genética, Universidad de Jaén, Paraje de las Lagunillas, s/n, E-23071 Jaén, Spain.ORCID 0000-0002-4180-422X
Universidad de Jaén · ESEuropean Molecular Biology Laboratory · DEScience for Life Laboratory · SE

Funding

Junta de Andalucía P20-00792 and BIO258Karolinska Institutet SciLifeLab SFO and KI fundsSpanish Ministry of Science and Innovation (MCIN) and ERDF PID2020-112853GB-C33Swedish Research Council VR 2019-02335, 2020-01480 and 2021-06112Universidad de Jaén Plan PropioVinnova 2020-03620Wallenberg Academy Fellowship KAW 2021.0167
6 · The paper itself

Abstract

RNA pol II assembly occurs in the cytoplasm before translocation of the enzyme to the nucleus. Affecting this assembly influences mRNA transcription in the nucleus and mRNA decay in the cytoplasm. However, very little is known about the consequences on ncRNA synthesis. In this work, we show that impairment of RNA pol II assembly leads to a decrease in cryptic non-coding RNAs (preferentially CUTs and SUTs). This alteration is partially restored upon overcoming the assembly defect. Notably, this drop in ncRNAs is only partially dependent on the nuclear exosome, which suggests a major specific effect of enzyme assembly. Our data also point out a defect in transcription termination, which leads us to propose that CTD phosphatase Rtr1 could be involved in this process.

Indexed as

ExosomesRNA Polymerase IIHumansRNA, UntranslatedTranscription, GeneticTranslocation, GeneticRNA Polymerase IIRNA, UntranslatedCUTsexosomencRNAsNNS terminationRNA polymerasesRNA polymerases assemblyRtr1 CTD phosphataseSaccharomyces cerevisiaeSUTstranscription

Identifiers

PMID38203678
PMCPMC10778713
OpenAlexW4390467452

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.