Evidence map›Paper›PMID 38200422›Full record

ArticleBMC plant biology2024

An insight into tissue culture-induced variation origin shared between anther culture-derived triticale regenerants.

Renata Orłowska, Janusz Zimny, Jacek Zebrowski, Piotr Androsiuk, Piotr T Bednarek

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. CuCells · 2025
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Renata OrłowskaPlant Breeding and Acclimatization Institute, National Research Institute, Radzików, Błonie, 05-870, Poland.
Janusz ZimnyPlant Breeding and Acclimatization Institute, National Research Institute, Radzików, Błonie, 05-870, Poland.
Jacek ZebrowskiInstitute of Biotechnology, College of Natural Science, University of Rzeszow, Al. Rejtana 16c, Rzeszow, 35-959, Poland.
Piotr AndrosiukDepartment of Plant Physiology, Genetics and Biotechnology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, Olsztyn, 10-719, Poland.
Piotr T BednarekPlant Breeding and Acclimatization Institute, National Research Institute, Radzików, Błonie, 05-870, Poland. p.bednarek@ihar.edu.pl.
Plant Breeding and Acclimatization Institute - National Research Institute · PLRzeszów University · PLUniversity of Warmia and Mazury in Olsztyn · PL

Funding

Ministry of Agriculture and Rural Development, Poland HORhn-801-PB-22/12
6 · The paper itself

Abstract

backgroundThe development of the plant in vitro techniques has brought about the variation identified in regenerants known as somaclonal or tissue culture-induced variation (TCIV). S-adenosyl-L-methionine (SAM), glutathione (GSH), low methylated pectins (LMP), and Cu(II) ions may be implicated in green plant regeneration efficiency (GPRE) and TCIV, according to studies in barley (Hordeum vulgare L.) and partially in triticale (× Triticosecale spp. Wittmack ex A. Camus 1927). Using structural equation models (SEM), these metabolites have been connected to the metabolic pathways (Krebs and Yang cycles, glycolysis, transsulfuration), but not for triticale. Using metabolomic and (epi)genetic data, the study sought to develop a triticale regeneration efficiency statistical model. The culture's induction medium was supplemented with various quantities of Cu(II) and Ag(I) ions for regeneration. The period of plant regeneration has also changed. The donor plant, anther-derived regenerants, and metAFLP were utilized to analyze TCIV concerning DNA in symmetric (CG, CHG) and asymmetric (CHH) sequence contexts. Attenuated Total Reflectance-Fourier Transfer Infrared (ATR-FTIR) spectroscopy was used to gather the metabolomic information on LMP, SAM, and GSH. To frame the data, a structural equation model was employed.

resultsAccording to metAFLP analysis, the average sequence change in the CHH context was 8.65%, and 0.58% was de novo methylation. Absorbances of FTIR spectra in regions specific for LMP, SAM, and GSH were used as variables values introduced to the SEM model. The average number of green regenerants per 100 plated anthers was 2.55.

conclusionsThe amounts of pectin demethylation, SAM, de novo methylation, and GSH are connected in the model to explain GPRE. By altering the concentration of Cu(II) ions in the medium, which influences the amount of pectin, triticale's GPRE can be increased.

Indexed as

HordeumTriticaleDietary SupplementsGlutathioneIonsPectinsGlutathioneIonsPectinsAnther cultureCopper ionsDNA methylationDNA sequenceGreen plant regeneration efficiencyGSHLow methylated pectinsSAMStructural equation modelingTriticale

Identifiers

PMID38200422
PMCPMC10782687
OpenAlexW4390719349

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.