Evidence map›Paper›PMID 38197474›Full record

ArticleThe Analyst2024

DNA nanotechnology for nucleic acid analysis: sensing of nucleic acids with DNA junction-probes.

Marcos V Foguel, Victor Zamora, Julio Ojeda, Mark Reed, Alexander Bennett, Percy Calvo-Marzal, Yulia V Gerasimova, Dmitry Kolpashchikov, Karin Y Chumbimuni-Torres

Open access · greenAbstract read
In one paragraph

Article in The Analyst, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Marcos V FoguelDepartment of Chemistry. University of Central Florida, 4000 Central Florida Boulevard, Orlando, Fl 32816, USA. Karin.ChumbimuniTorres@ucf.edu.
Victor ZamoraEscuela Professional de Quimica, Facultad de Ciencias, Universidad Nacional Ingenieria, Av. Tupac 210, Lima, Peru.ORCID http://orcid.org/0000-0002-8318-7901
Julio OjedaDepartment of Chemistry. University of Central Florida, 4000 Central Florida Boulevard, Orlando, Fl 32816, USA. Karin.ChumbimuniTorres@ucf.edu.
Mark ReedDepartment of Chemistry. University of Central Florida, 4000 Central Florida Boulevard, Orlando, Fl 32816, USA. Karin.ChumbimuniTorres@ucf.edu.
Alexander BennettDepartment of Chemistry. University of Central Florida, 4000 Central Florida Boulevard, Orlando, Fl 32816, USA. Karin.ChumbimuniTorres@ucf.edu.
Percy Calvo-MarzalDepartment of Chemistry. University of Central Florida, 4000 Central Florida Boulevard, Orlando, Fl 32816, USA. Karin.ChumbimuniTorres@ucf.edu.
Yulia V GerasimovaDepartment of Chemistry. University of Central Florida, 4000 Central Florida Boulevard, Orlando, Fl 32816, USA. Karin.ChumbimuniTorres@ucf.edu.ORCID http://orcid.org/0000-0001-8804-9770
Dmitry KolpashchikovDepartment of Chemistry. University of Central Florida, 4000 Central Florida Boulevard, Orlando, Fl 32816, USA. Karin.ChumbimuniTorres@ucf.edu.ORCID http://orcid.org/0000-0002-8682-6553
Karin Y Chumbimuni-TorresDepartment of Chemistry. University of Central Florida, 4000 Central Florida Boulevard, Orlando, Fl 32816, USA. Karin.ChumbimuniTorres@ucf.edu.ORCID http://orcid.org/0000-0001-5564-3829
University of Central Florida · USNational University of Engineering · PE

Funding

Novel Quantitative Cost-effective Assay for the Diagnosis and Monitoring of HIV viral loadsR03AI164938 · NIAID · UNIVERSITY OF CENTRAL FLORIDA · PI CHUMBIMUNI-TORRES, KARIN · 2021 to 2022
$143k
NIAID NIH HHS R03 AI164938
6 · The paper itself

Abstract

DNA nanotechnology deals with the design of non-naturally occurring DNA nanostructures that can be used in biotechnology, medicine, and diagnostics. In this study, we introduced a nucleic acid five-way junction (5WJ) structure for direct electrochemical analysis of full-length biological RNAs. To the best of our knowledge, this is the first report on the interrogation of such long nucleic acid sequences by hybridization probes attached to a solid support. A hairpin-shaped electrode-bound oligonucleotide hybridizes with three adaptor strands, one of which is labeled with methylene blue (MB). The four strands are combined into a 5WJ structure only in the presence of specific DNA or RNA analytes. Upon interrogation of a full-size 16S rRNA in the total RNA sample, the electrode-bound MB-labeled 5WJ association produces a higher signal-to-noise ratio than electrochemical nucleic acid biosensors of alternative design. This advantage was attributed to the favorable geometry on the 5WJ nanostructure formed on the electrode's surface. The 5WJ biosensor is a cost-efficient alternative to the traditional electrochemical biosensors for the analysis of nucleic acids due to the universal nature of both the electrode-bound and MB-labeled DNA components.

Indexed as

Biosensing TechniquesNucleic AcidsDNADNA ProbesElectrochemical TechniquesMethylene BlueNanotechnologyNucleic Acid HybridizationRNA, Ribosomal, 16SDNADNA ProbesMethylene BlueNucleic AcidsRNA, Ribosomal, 16S

Identifiers

PMID38197474
PMCPMC11439508
OpenAlexW4390246628

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.