Evidence map›Paper›PMID 38197365›Full record

ArticleThe journal of physical chemistry. B2024

Temperature-Dependent Twist of Double-Stranded RNA Probed by Magnetic Tweezer Experiments and Molecular Dynamics Simulations.

Hana Dohnalová, Mona Seifert, Eva Matoušková, Misha Klein, Flávia S Papini, Jan Lipfert, David Dulin, Filip Lankaš

Open access · hybridAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Hana DohnalováDepartment of Informatics and Chemistry, University of Chemistry and Technology Prague, Technická 5, 166 28 Praha 6, Czech Republic.
Mona SeifertJunior Research Group 2, Interdisciplinary Center for Clinical Research, Friedrich-Alexander-University Erlangen-Nürnberg, Cauerstr. 3, Erlangen 91058, Germany.
Eva MatouškováDepartment of Informatics and Chemistry, University of Chemistry and Technology Prague, Technická 5, 166 28 Praha 6, Czech Republic.
Misha KleinDepartment of Physics and Astronomy and LaserLaB Amsterdam, Vrije Universiteit Amsterdam, De Boelelaan 1081, Amsterdam 1081 HV, The Netherlands.
Flávia S PapiniJunior Research Group 2, Interdisciplinary Center for Clinical Research, Friedrich-Alexander-University Erlangen-Nürnberg, Cauerstr. 3, Erlangen 91058, Germany.
Jan LipfertSoft Condensed Matter and Biophysics, Department of Physics and Debye Institute, Utrecht University, Utrecht 3584 CC, The Netherlands.
David DulinJunior Research Group 2, Interdisciplinary Center for Clinical Research, Friedrich-Alexander-University Erlangen-Nürnberg, Cauerstr. 3, Erlangen 91058, Germany.
Filip LankašDepartment of Informatics and Chemistry, University of Chemistry and Technology Prague, Technická 5, 166 28 Praha 6, Czech Republic.ORCID 0000-0003-1154-3855
Friedrich-Alexander-Universität Erlangen-Nürnberg · DEUniversity of Chemistry and Technology, Prague · CZUtrecht University · NLVrije Universiteit Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA plays critical roles in the transmission and regulation of genetic information and is increasingly used in biomedical and biotechnological applications. Functional RNAs contain extended double-stranded regions, and the structure of double-stranded RNA (dsRNA) has been revealed at high resolution. However, the dependence of the properties of the RNA double helix on environmental effects, notably temperature, is still poorly understood. Here, we use single-molecule magnetic tweezer measurements to determine the dependence of the dsRNA twist on temperature. We find that dsRNA unwinds with increasing temperature, even more than DNA, with Δ

Indexed as

Molecular Dynamics SimulationRNA, Double-StrandedDNAMagnetic PhenomenaNucleic Acid ConformationRNATemperatureDNARNARNA, Double-Stranded

Identifiers

PMID38197365
PMCPMC10823466
OpenAlexW4390702429

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.