Evidence map›Paper›PMID 38196748›Full record

ArticleArXiv2023

Scaling Monte-Carlo-Based Inference on Antibody and TCR Repertoires.

Josiah Couch, Rohit Arora, Jasper Braun, Joesph Kaplinsky, Elliot Hill, Anthony Li, Brett Altschul, Ramy Arnaout

Abstract readPreprint
In one paragraph

Article in ArXiv, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Josiah CouchDepartment of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02215.ORCID 0000-0002-7416-5858
Rohit AroraDepartment of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02215.ORCID 0000-0001-7128-6403
Jasper BraunDepartment of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02215.ORCID 0000-0003-1250-4399
Joesph KaplinskyDepartment of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02215.ORCID 0000-0003-3001-4721
Elliot HillDepartment of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02215.ORCID 0009-0004-1987-3749
Anthony LiDepartment of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02215.
Brett AltschulDepartment of Physics and Astronomy, University of South Carolina, Columbia, SC 29208.ORCID 0000-0002-3297-7815
Ramy ArnaoutDepartment of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02215.ORCID 0000-0001-6955-9310

Funding

An Integrated Multilevel Modeling Framework for Repertoire-Based DiagnosticsR01AI148747 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ARNAOUT, RAMY · 2020 to 2024
$2.8M
NIAID NIH HHS R01 AI148747
6 · The paper itself

Abstract

Previously, it has been shown that maximum-entropy models of immune-repertoire sequence can be used to determine a person's vaccination status. However, this approach has the drawback of requiring a computationally intensive method to compute each model's partition function

Identifiers

PMID38196748
PMCPMC10775351

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.