Evidence map›Paper›PMID 38195981›Full record

ArticleScientific reports2024

In vitro co-expression chromatin assembly and remodeling platform for plant histone variants.

Petra Banko, Kei-Ichi Okimune, Szilvia K Nagy, Akinori Hamasaki, Ryo Morishita, Hitoshi Onouchi, Taichi E Takasuka

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Streamlined cell-free protein synthesis using wheat germ extract.Applied microbiology and biotechnology · 2026
    Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Petra Banko *Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.
Kei-Ichi Okimune *Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.
Szilvia K NagyResearch Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.
Akinori HamasakiCellFree Sciences Co., Ltd, Matsuyama, 790-8577, Japan.
Ryo MorishitaCellFree Sciences Co., Ltd, Matsuyama, 790-8577, Japan.
Hitoshi OnouchiResearch Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.
Taichi E TakasukaResearch Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan. takasuka@agr.hokudai.ac.jp.
Hokkaido University · JPCellFree Sciences (Japan) · JP

Funding

National Research, Development and Innovation Office, Hungary 129083
6 · The paper itself

Abstract

Histone variants play a central role in shaping the chromatin landscape in plants, yet, how their distinct combinations affect nucleosome properties and dynamics is still largely elusive. To address this, we developed a novel chromatin assembly platform for Arabidopsis thaliana, using wheat germ cell-free protein expression. Four canonical histones and five reported histone variants were used to assemble twelve A. thaliana nucleosome combinations. Seven combinations were successfully reconstituted and confirmed by supercoiling and micrococcal nuclease (MNase) assays. The effect of the remodeling function of the CHR11-DDR4 complex on these seven combinations was evaluated based on the nucleosome repeat length and nucleosome spacing index obtained from the MNase ladders. Overall, the current study provides a novel method to elucidate the formation and function of a diverse range of nucleosomes in plants.

Indexed as

ArabidopsisNucleosomesChromatinChromatin Assembly and DisassemblyHistonesChromatinHistonesNucleosomes

Identifiers

PMID38195981
PMCPMC10776871
OpenAlexW4390699088

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.