Evidence map›Paper›PMID 38195389›Full record

ArticleBMC plant biology2024

Genome-wide analysis of the Tritipyrum NAC gene family and the response of TtNAC477 in salt tolerance.

Xiaojuan Liu, Guangyi Zhou, Songshu Chen, Zhenzhen Jia, Suqin Zhang, Fang He, Mingjian Ren

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Frontiers in plant science · 2025
    Review
  5. Article
  6. Overexpression ofInternational journal of molecular sciences · 2024
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  7. Overexpression of aInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xiaojuan Liu *Guizhou Subcenter of National Wheat Improvement Center, Key Laboratory of Molecular Breeding for Grain and Oil Crops in Guizhou Province, Agronomy College, Guizhou University, Guiyang, 550025, China.
Guangyi Zhou *Guizhou Subcenter of National Wheat Improvement Center, Key Laboratory of Molecular Breeding for Grain and Oil Crops in Guizhou Province, Agronomy College, Guizhou University, Guiyang, 550025, China.
Songshu ChenGuizhou Subcenter of National Wheat Improvement Center, Key Laboratory of Molecular Breeding for Grain and Oil Crops in Guizhou Province, Agronomy College, Guizhou University, Guiyang, 550025, China.
Zhenzhen JiaSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, China.
Suqin ZhangGuizhou Subcenter of National Wheat Improvement Center, Key Laboratory of Molecular Breeding for Grain and Oil Crops in Guizhou Province, Agronomy College, Guizhou University, Guiyang, 550025, China.
Fang HeGuizhou Subcenter of National Wheat Improvement Center, Key Laboratory of Molecular Breeding for Grain and Oil Crops in Guizhou Province, Agronomy College, Guizhou University, Guiyang, 550025, China.
Mingjian RenGuizhou Subcenter of National Wheat Improvement Center, Key Laboratory of Molecular Breeding for Grain and Oil Crops in Guizhou Province, Agronomy College, Guizhou University, Guiyang, 550025, China. mxren@gzu.edu.cn.
Guizhou University · CNGuizhou Normal University · CN

Funding

Guizhou Provincial Science and Technology Plan Pro Qian Kehe Support [2022]key026Key Laboratory of Molecular Breeding for Grain and Oil Crops in Guizhou Province QiankeheZhongyindi (2023) 008National Natural Science Foundation of China 32160442National Natural Science Foundation of China 32260481
6 · The paper itself

Abstract

NAC transcription factors are widely distributed in the plant kingdom and play an important role in the response to various abiotic stresses in plant species. Tritipyrum, an octoploid derived from hybridization of Triticum aestivum (AABBDD) and Thinopyrum elongatum (EE), is an important genetic resource for integrating the desirable traits of Th. elongatum into wheat. In this study, we investigated the tissue distribution and expression of Tritipyrum NAC genes in the whole genomes of T. aestivum and Th. elongatum after obtaining their complete genome sequences. Based on phylogenetic relationships, conserved motifs, gene synthesis, evolutionary analysis, and expression patterns, we identified and characterized 732 Tritipyrum NAC genes. These genes were divided into six main groups (A, B, C, D, E, and G) based on phylogenetic relationships and evolutionary studies, with members of these groups sharing the same motif composition. The 732 TtNAC genes are widely distributed across 28 chromosomes and include 110 duplicated genes. Gene synthesis analysis indicated that the NAC gene family may have a common ancestor. Transcriptome data and quantitative polymerase chain reaction (qPCR) expression profiles showed 68 TtNAC genes to be highly expressed in response to various salt stress and recovery treatments. Tel3E01T644900 (TtNAC477) was particularly sensitive to salt stress and belongs to the same clade as the salt tolerance genes ANAC019 and ANAC055 in Arabidopsis. Pearson correlation analysis identified 751 genes that correlated positively with expression of TtNAC477, and these genes are enriched in metabolic activities, cellular processes, stimulus responses, and biological regulation. TtNAC477 was found to be highly expressed in roots, stems, and leaves in response to salt stress, as confirmed by real-time PCR. These findings suggest that TtNAC477 is associated with salt tolerance in plants and might serve as a valuable exogenous gene for enhancing salt tolerance in wheat.

Indexed as

ArabidopsisArabidopsis ProteinsBiological EvolutionPhylogenyPoaceaeSalt StressSalt ToleranceTranscription FactorsTriticumANAC055 protein, ArabidopsisArabidopsis ProteinsTranscription FactorsExpression patternsGenome-wideSalt-toleranceTritipyrumTtNAC477WRKY

Identifiers

PMID38195389
PMCPMC10775630
OpenAlexW4390756108

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.