Evidence map›Paper›PMID 38194461›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Toward the quantification of α-synuclein aggregates with digital seed amplification assays.

Tal Gilboa, Zoe Swank, Rohan Thakur, Russell A Gould, Kean Hean Ooi, Maia Norman, Elizabeth A Flynn, Brendan T Deveney, Anqi Chen, Ella Borberg and 5 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Review
  3. Digital seed amplification assay for TDP-43 aggregate quantification in CSF.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  4. Review
  5. The amplification of α-synuclein amyloid fibrils.Biochemical Society transactions · 2026
    Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Digital seed amplification assay for TDP-43 aggregate quantification in CSF.medRxiv : the preprint server for health sciences · 2025
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Biomarker-Based Approach to α-Synucleinopathies: Lessons from Neuropathology.Movement disorders : official journal of the Movement Disorder Society · 2024
    Article
  19. Intercellular transmission of alpha-synuclein.Frontiers in molecular neuroscience · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Tal Gilboa *Department of Pathology, Brigham and Women's Hospital, Boston, MA 02115.ORCID 0000-0001-8172-7786
Zoe Swank *Department of Pathology, Brigham and Women's Hospital, Boston, MA 02115.ORCID 0000-0001-8825-0335
Rohan ThakurJohn A. Paulson School of Engineering & Applied Sciences, Harvard University, Cambridge, MA 02138.
Russell A GouldWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115.ORCID 0000-0002-1789-0631
Kean Hean OoiDepartment of Medical Sciences, Harvard Medical School, Boston, MA 02115.
Maia NormanDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115.
Elizabeth A FlynnDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115.
Brendan T DeveneyJohn A. Paulson School of Engineering & Applied Sciences, Harvard University, Cambridge, MA 02138.
Anqi ChenJohn A. Paulson School of Engineering & Applied Sciences, Harvard University, Cambridge, MA 02138.
Ella BorbergDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115.
Anastasia KuzkinaHarvard Medical School, Boston, MA 02115.ORCID 0000-0001-5443-8540
Alain NdayisabaHarvard Medical School, Boston, MA 02115.ORCID 0000-0001-7611-7115
Vikram KhuranaHarvard Medical School, Boston, MA 02115.
David A WeitzWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115.
David R WaltDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115.ORCID 0000-0002-5524-7348

Funding

Elucidating the Biological Differences Between Distinct Fibrillar and Non-Fibrillar Alpha-Synuclein Inclusions in Human Stem-Cell ModelsR01NS109209 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI KHURANA, VIKRAM · 2020 to 2024
$4.5M
NINDS NIH HHS R01 NS109209
6 · The paper itself

Abstract

The quantification and characterization of aggregated α-synuclein in clinical samples offer immense potential toward diagnosing, treating, and better understanding neurodegenerative synucleinopathies. Here, we developed digital seed amplification assays to detect single α-synuclein aggregates by partitioning the reaction into microcompartments. Using pre-formed α-synuclein fibrils as reaction seeds, we measured aggregate concentrations as low as 4 pg/mL. To improve our sensitivity, we captured aggregates on antibody-coated magnetic beads before running the amplification reaction. By first characterizing the pre-formed fibrils with transmission electron microscopy and size exclusion chromatography, we determined the specific aggregates targeted by each assay platform. Using brain tissue and cerebrospinal fluid samples collected from patients with Parkinson's Disease and multiple system atrophy, we demonstrated that the assay can detect endogenous pathological α-synuclein aggregates. Furthermore, as another application for these assays, we studied the inhibition of α-synuclein aggregation in the presence of small-molecule inhibitors and used a custom image analysis pipeline to quantify changes in aggregate growth and filament morphology.

Indexed as

Multiple System AtrophyParkinson DiseaseSynucleinopathiesalpha-SynucleinAntibodiesHumansalpha-SynucleinAntibodiesdigital assayParkinson’s disease (PD)protein aggregationseed amplification assay (SAA)α-synuclein

Identifiers

PMID38194461
PMCPMC10801878

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.