Evidence map›Paper›PMID 38193570›Full record

ArticleJournal of clinical laboratory analysis2024

Genetic variations in IKZF3, LET7-a2, and CDKN2B-AS1: Exploring associations with metabolic syndrome susceptibility and clinical manifestations.

Alireza Paniri, Mohammad Mahdi Hosseini, Sadegh Fattahi, Galia Amiribozorgi, Mohsen Asouri, Mansooreh Maadi, Nima Motamed, Farhad Zamani, Haleh Akhavan-Niaki

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Alireza PaniriGenetics Department, Faculty of Medicine, Babol University of Medical Sciences, Babol, Iran.
Mohammad Mahdi HosseiniFaculty of Medicine, Babol University of Medical Sciences, Babol, Iran.
Sadegh FattahiZoonoses Research Center, Pasteur Institute of Iran, Amol, Iran.
Galia AmiribozorgiZoonoses Research Center, Pasteur Institute of Iran, Amol, Iran.
Mohsen AsouriZoonoses Research Center, Pasteur Institute of Iran, Amol, Iran.
Mansooreh MaadiGastrointestinal and Liver Diseases Research Center, Iran University of Medical Sciences, Tehran, Iran.
Nima MotamedDepartment of Social Medicine, Zanjan University of Medical Sciences, Zanjan, Iran.
Farhad ZamaniGastrointestinal and Liver Diseases Research Center, Iran University of Medical Sciences, Tehran, Iran.
Haleh Akhavan-NiakiGenetics Department, Faculty of Medicine, Babol University of Medical Sciences, Babol, Iran.ORCID https://orcid.org/0000-0003-3681-0227
Pasteur Institute of Iran · IRIran University of Medical Sciences · IRBabol University of Medical Sciences · IRZanjan University of Medical Sciences · IR

Funding

Babol University of Medical Sciences
6 · The paper itself

Abstract

BACKGROUND AND

aimMetabolic syndrome (MetS) increases the risk of atherosclerosis and diabetes, but there are no approved predictive markers. This study assessed the role of specific genetic variations in MetS susceptibility and their impact on clinical manifestations.

methodIn this study, a genotype-phenotype assessment was performed for IKZF3 (rs907091), microRNA-let-7a-2 (rs1143770), and lncRNA-CDKN2B-AS1 (rs1333045).

resultsAnalyses indicate that while rs907091 and rs1143770 may have potential associations with MetS susceptibility and an increased risk of atherosclerosis and diabetes, there is an observed trend suggesting that the rs1333045 CC genotype may be associated with a decreased risk of MetS. The genotypes and allele frequencies of rs1333045 were significantly different between studied groups (OR = 0.56, 95% CI 0.38-0.81, p = 0.002, and OR = 0.71, 95% CI 0.55-0.92, p = 0.008), with the CC genotype displaying increased levels of HDL. Furthermore, the rs907091 TT genotype was associated with increased triglyceride, cholesterol, and HOMA index in MetS patients. Subjects with the CC genotype for rs1143770 had higher HbA1c and BMI. In silico analyses illustrated that rs907091 C remarkably influences the secondary structure and the target site of a broad spectrum of microRNAs, especially hsa-miR-4497. Moreover, rs1333045 creates a binding site for seven different microRNAs.

conclusionFurther studies on other populations may help confirm these SNPs as useful predictive markers in assessing the MetS risk.

Indexed as

AtherosclerosisDiabetes MellitusMetabolic SyndromeMicroRNAsRNA, Long NoncodingCyclin-Dependent Kinase Inhibitor p15Genetic Predisposition to DiseaseGenotypeHumansIkaros Transcription FactorPolymorphism, Single NucleotideRNA, AntisenseCDKN2B protein, humanCyclin-Dependent Kinase Inhibitor p15Ikaros Transcription FactorIKZF3 protein, humanMicroRNAsmirnlet7 microRNA, humanRNA, AntisenseRNA, Long NoncodingLncRNAsmetabolic syndromemicroRNAsnon-coding RNAsobesitypolymorphismSNPs

Identifiers

PMID38193570
PMCPMC10829692
OpenAlexW4390776186

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.