Evidence map›Paper›PMID 38193377›Full record

ArticleNanoscale2024

Self-assembly of DNA parallel double-crossover motifs.

Jung Yeon Lee, Qi Yang, Xu Chang, Maciej Jeziorek, Devanathan Perumal, Tiffany R Olivera, Jean-Pierre Etchegaray, Fei Zhang

Abstract read
In one paragraph

Article in Nanoscale, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jung Yeon LeeDepartment of Chemistry, Rutgers University, Newark, NJ 07102, USA. fei.zhang@rutgers.edu.
Qi YangDepartment of Chemistry, Rutgers University, Newark, NJ 07102, USA. fei.zhang@rutgers.edu.
Xu ChangDepartment of Chemistry, Rutgers University, Newark, NJ 07102, USA. fei.zhang@rutgers.edu.
Maciej JeziorekDepartment of Biological Sciences, Rutgers University, Newark, NJ 07102, USA.
Devanathan PerumalDepartment of Chemistry, Rutgers University, Newark, NJ 07102, USA. fei.zhang@rutgers.edu.
Tiffany R OliveraDepartment of Chemistry, Rutgers University, Newark, NJ 07102, USA. fei.zhang@rutgers.edu.
Jean-Pierre EtchegarayDepartment of Biological Sciences, Rutgers University, Newark, NJ 07102, USA.
Fei ZhangDepartment of Chemistry, Rutgers University, Newark, NJ 07102, USA. fei.zhang@rutgers.edu.ORCID http://orcid.org/0000-0002-3177-7547

Funding

TET-mediated DNA oxidations in mucosal innate defenseR21AI167079 · NIAID · RUTGERS THE STATE UNIV OF NJ NEWARK · PI ETCHEGARAY, JEAN-PIERRE, GAO, NAN · 2022 to 2023
$432k
NIAID NIH HHS R21 AI167079
6 · The paper itself

Abstract

DNA double-crossover motifs, including parallel and antiparallel crossovers, serve as the structural foundation for the creation of diverse nanostructures and dynamic devices in DNA nanotechnology. Parallel crossover motifs have unique advantages over the widely used antiparallel crossover design but have not developed as substantially due to the difficulties in assembly. Here we created 29 designs of parallel double-crossover motifs varying in hybridization pathways, central domain lengths, and crossover locations to investigate their assembly mechanism. Arrays were successfully formed in four distinct designs, and large tubular structures were obtained in seven designs with predefined pathways and central domains appoximately 16 nucleotides in length. The nanotubes obtained from parallel crossover design showed improved nuclease resistance than the ones from the antiparallel counterpart design. Overall, our study provides a basis for the development of generalized assembly rules of DNA parallel crossover systems and opens new opportunities for their potential use in biological systems.

Indexed as

NanostructuresNanotubesDNANanotechnologyNucleic Acid ConformationDNA

Identifiers

PMID38193377
PMCPMC10809758

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.