Evidence map›Paper›PMID 38192186›Full record

ArticleEuropean journal of haematology2024

Transcriptome analysis of primary adult B-cell lineage acute lymphoblastic leukemia identifies pathogenic variants and gene fusions, and predicts subtypes for in depth molecular diagnosis.

Mirjam Podgorica, Elsa Drivet, Jonas Krag Viken, Alyssa Richman, Johanne Vestbøstad, Peter Szodoray, Ann Kristin Kvam, Hilde Skuterud Wik, Geir E Tjønnfjord, Ludvig A Munthe and 2 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of haematology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Mirjam PodgoricaDepartment of Immunology, Oslo University Hospital, Oslo, Norway.ORCID https://orcid.org/0009-0007-5328-5053
Elsa DrivetDepartment of Immunology, Oslo University Hospital, Oslo, Norway.ORCID https://orcid.org/0009-0006-3481-4071
Jonas Krag VikenDepartment of Immunology, Oslo University Hospital, Oslo, Norway.
Alyssa RichmanDepartment of Biomedical and Health Sciences, University of Vermont, Burlington, Vermont, USA.ORCID https://orcid.org/0009-0001-2148-2892
Johanne VestbøstadDepartment of Immunology, Oslo University Hospital, Oslo, Norway.ORCID https://orcid.org/0009-0000-8238-5087
Peter SzodorayB Cell Receptor Signaling Group (BCRSG), Department of Immunology, Oslo University Hospital, Oslo, Norway.ORCID https://orcid.org/0000-0003-4443-6159
Ann Kristin KvamDepartment of Haematology, Oslo University Hospital, Oslo, Norway.ORCID https://orcid.org/0009-0008-5026-5177
Hilde Skuterud WikDepartment of Haematology, Oslo University Hospital, Oslo, Norway.ORCID https://orcid.org/0000-0002-1035-5521
Geir E TjønnfjordKG Jebsen Center for B-cell Malignancies, Institute of Clinical Medicine, Department of Immunology, University of Oslo, Oslo, Norway.ORCID https://orcid.org/0000-0002-7757-4091
Ludvig A MuntheDepartment of Immunology, Oslo University Hospital, Oslo, Norway.ORCID https://orcid.org/0000-0002-0344-3654
Seth FrietzeDepartment of Biomedical and Health Sciences, University of Vermont, Burlington, Vermont, USA.ORCID https://orcid.org/0000-0003-4058-3661
Hilde SchjervenDepartment of Immunology, Oslo University Hospital, Oslo, Norway.ORCID https://orcid.org/0000-0001-9287-3375
Oslo University Hospital · NOUniversity of Vermont · US

Funding

Understanding Ikaros molecular functions for targeted therapies of pre-B ALLR01CA230618 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRIETZE, SETH E, SCHJERVEN, HILDE · 2018 to 2022
$1.8M
NCI NIH HHS R01 CA230618NIH HHS R01CA230618
6 · The paper itself

Abstract

backgroundB-cell acute lymphoblastic leukemia (B-ALL) is classified into subgroups based on known driver oncogenes and molecular lesions, including translocations and recurrent mutations. However, the current diagnostic tests do not identify subtypes or oncogenic lesions for all B-ALL samples, creating a heterogeneous B-ALL group of unknown subtypes.

methodsWe sorted primary adult B-ALL cells and performed transcriptome analysis by bulk RNA sequencing (RNA-seq).

resultsTranscriptomic analysis of an adult B-ALL cohort allowed the classification of four patient samples with subtypes that were not previously revealed by standard gene panels. The leukemia of two patients were of the DUX4 subtype and two were CRLF2

conclusionWe demonstrate that RNA-seq is an effective tool for precision medicine in B-ALL by providing comprehensive molecular profiling of leukemia cells, identifying subtype and oncogenic lesions, and stratifying patients for appropriate therapy.

Indexed as

Precursor B-Cell Lymphoblastic Leukemia-LymphomaPrecursor Cell Lymphoblastic Leukemia-LymphomaAdultCell LineageGene Expression ProfilingGene FusionHumansProto-Oncogene Proteins p21(ras)TranscriptomeProto-Oncogene Proteins p21(ras)leukemiaprecision medicineRNA‐Seqtranscriptome

Identifiers

PMID38192186
PMCPMC10990798
OpenAlexW4390766964

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.