ArticleNature methods2024
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.
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Article in Nature methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.
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40citing papers in PubMed
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
40 citing papers in PubMed.
- Trial
- Quality assessment and control of unprocessed anatomical, functional and diffusion MRI of the human brain using MRIQC.Nature protocols · 2026Review
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- The Austrian MS database and the Austrian MS cohort : A national effort towards data harmonization and prospective data collection.Wiener klinische Wochenschrift · 2026Article
- Dense longitudinal neuroimaging reveals individual brain change trajectories.Trends in cognitive sciences · 2026Review
- A geometry aware framework enhances noninvasive mapping of whole human brain dynamics.Nature biomedical engineering · 2026Article
- BOLD fMRI at 9.4T with 3D stack-of-spirals readouts.Magma (New York, N.Y.) · 2026Article
- White matter changes in reward circuits of amyotrophic lateral sclerosis: a fixel-based study of appetite loss.BMC medicine · 2026Article
- AQuA2-Cloud: a web platform for fluorescence bioimaging activity analysis.bioRxiv : the preprint server for biology · 2026Article
- Predicting functional topography of the human visual cortex from cortical anatomy at scale.bioRxiv : the preprint server for biology · 2026Article
- NeuroStream: an interactive platform for exploratory visualization and harmonization of multicohort brain MRI data.Bioinformatics advances · 2026Article
- IntegriLAB: a blockchain-enabled electronic lab notebook for reproducible neuroimaging research.Frontiers in neuroinformatics · 2026Article
- TI-Toolbox: An Open-Source Software for Temporal Interference Stimulation Research.bioRxiv : the preprint server for biology · 2025Article
- SPM-30 years and beyond.Cerebral cortex (New York, N.Y. : 1991) · 2025Review
- Wired Differently? Brain Temporal Complexity and Intelligence in Autism Spectrum Disorder.Brain sciences · 2025Article
- DICOM datasets for reproducible neuroimaging research across manufacturers and software versions.Scientific data · 2025Article
- An Annotated Multi-Site and Multi-Contrast Magnetic Resonance Imaging Dataset for the study of the Human Tongue Musculature.Scientific data · 2025Article
- Review
Corrections and comments
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Authors and funding
52 authors.
Angela I Renton *The University of Queensland, Queensland Brain Institute, St Lucia, Brisbane, Queensland, Australia. angie.renton23@gmail.com.ORCID http://orcid.org/0000-0003-4815-9056
Thuy T Dao *The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0003-0715-3555
Tom JohnstoneCentre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
Oren CivierCentre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.ORCID http://orcid.org/0000-0003-0090-271X
Ryan P SullivanThe University of Sydney, School of Biomedical Engineering, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0001-5554-7378
David J WhiteCentre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.ORCID http://orcid.org/0000-0001-8694-1474
Paris LyonsCentre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
Benjamin M SladeCentre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
David F AbbottThe Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0002-7259-8238
Toluwani J AmosSchool of Life Science and Technology, University of Electronic Science and Technology, Chengdu, China.ORCID http://orcid.org/0009-0003-2153-2866
Saskia BollmannThe University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.
Andy BottingAustralian Research Data Commons (ARDC), Sydney, New South Wales, Australia.
Megan E J CampbellSchool of Psychological Sciences, University of Newcastle, Newcastle, New South Wales, Australia.ORCID http://orcid.org/0000-0003-4051-1529
Jeryn ChangThe University of Queensland, School of Biomedical Sciences, St Lucia, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-6659-365X
Thomas G CloseThe University of Sydney, School of Biomedical Engineering, Sydney, New South Wales, Australia.
Monika DörigIntegrative Spinal Research, Department of Chiropractic Medicine, Balgrist University Hospital, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0009-0008-3617-2185
Korbinian EcksteinThe University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-4538-7072
Gary F EganThe Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, Victoria, Australia.
Stefanie EvasSchool of Psychology, University of Adelaide, Adelaide, South Australia, Australia.ORCID http://orcid.org/0000-0002-2090-2074
Guillaume FlandinWellcome Centre for Human Neuroimaging, University College London, London, UK.
Kelly G GarnerSchool of Psychology, University of New South Wales, Sydney, New South Wales, Australia.
Marta I GarridoMelbourne School of Psychological Sciences, he University of Melbourne, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0003-0679-4959
Satrajit S GhoshMcGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5312-6729
Martin GrignardGIGA CRC In-Vivo Imaging, University of Liège, Liège, Belgium.
Yaroslav O HalchenkoCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA.
Anthony J HannanThe Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0001-7532-8922
Anibal S HeinsfeldDepartment of Psychology, Center for Perceptual Systems, Institute for Neuroscience, Center For Learning and Memory, The University of Texas at Austin, Austin, TX, USA.
Laurentius HuberNational Institute of Mental Health (NIMH), National Institutes Health, Bethesda, MD, USA.
Matthew E HughesCentre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
Jakub R KaczmarzykDepartment of Biomedical Informatics, Stony Brook University, New York, NY, USA.ORCID http://orcid.org/0000-0002-5544-7577
Lars KasperBRAIN-TO Lab, Krembil Brain Institute, University Health Network, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0001-7667-603X
Levin KuhlmannDepartment of Data Science and AI, Faculty of Information Technology, Monash University, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0002-5108-6348
Kexin LouThe University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.
Yorguin-Jose Mantilla-RamosGrupo Neuropsicología y Conducta (GRUNECO), Facultad de Medicina, Universidad de Antioquia, Medellín, Colombia.ORCID http://orcid.org/0000-0003-4473-0876
Jason B MattingleyThe University of Queensland, Queensland Brain Institute, St Lucia, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0003-0929-9216
Michael L MeierIntegrative Spinal Research, Department of Chiropractic Medicine, Balgrist University Hospital, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-6004-8338
Jo MorrisAustralian Research Data Commons (ARDC), Sydney, New South Wales, Australia.
Akshaiy NarayananSchool of Computer Science, The University of Auckland, Auckland, New Zealand.
Franco PestilliDepartment of Psychology, Center for Perceptual Systems, Institute for Neuroscience, Center For Learning and Memory, The University of Texas at Austin, Austin, TX, USA.
Aina PuceDepartment of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA.
Fernanda L RibeiroThe University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-1620-4193
Nigel C RogaschThe Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, Victoria, Australia.
Chris RordenMcCausland Center for Brain Imaging, Department of Psychology, University of South Carolina, Columbia, SC, USA.
Mark M SchiraSchool of Psychology, University of Wollongong, Wollongong, New South Wales, Australia.ORCID http://orcid.org/0000-0002-7945-0498
Thomas B ShawThe University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0003-2490-0532
Paul F SowmanMacquarie University, School of Psychological Sciences, Sydney, New South Wales, Australia.
Gershon SpitzDepartment of Neuroscience, Central Clinical School, Faculty of Medicine, Nursing and Health Sciences, Monash University, Melbourne, Victoria, Australia.
Ashley W StewartThe University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-5951-5952
Xincheng YeThe University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-2544-835X
Judy D ZhuMacquarie University, School of Psychological Sciences, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0003-0958-6047
Aswin NarayananThe University of Queensland, Centre for Advanced Imaging, St Lucia, Brisbane, Queensland, Australia.
Steffen BollmannThe University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia. s.bollmann@uq.edu.au.ORCID http://orcid.org/0000-0002-2909-0906
Funding
Resource DiscoveryP41EB019936 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI David Nelson Kennedy · 2016 to 2026
$15.2MA community-driven development of the brain imaging data standard (BIDS) to describe macroscopic brain connectionsR01MH126699 · NIMH · UNIVERSITY OF TEXAS AT AUSTIN · PI PESTILLI, FRANCO · 2021 to 2022
$681kCRCNS: US-France Data Sharing Proposal: Open science & cloud computing of MEEGR01EB030896 · NIBIB · TRUSTEES OF INDIANA UNIVERSITY · PI PESTILLI, FRANCO, PUCE, AINA · 2020 to 2022
$651kNIBIB NIH HHS P41 EB019936NIBIB NIH HHS R01 EB030896NIMH NIH HHS R01 MH126699
Abstract
Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.
Indexed as
NeuroimagingSoftwareBrainHumansReproducibility of ResultsUser-Computer Interface
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.