Evidence map›Paper›PMID 38191899›Full record

ArticleScientific reports2024

Unraveling the function and structure impact of deleterious missense SNPs in the human OX1R receptor by computational analysis.

Mahvash Farajzadeh-Dehkordi, Ladan Mafakher, Abbas Harifi, Hashem Haghdoost-Yazdi, Hossein Piri, Babak Rahmani

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mahvash Farajzadeh-DehkordiStudent Research Committee, Qazvin University of Medical Sciences, Qazvin, Iran.
Ladan MafakherThalassemia & Hemoglobinopathy Research Center, Health Research Institute, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
Abbas HarifiDepartment of Electrical and Computer Engineering, University of Hormozgan, Bandar Abbas, Hormozgan, Iran.
Hashem Haghdoost-YazdiCellular and Molecular Research Center, Research Institute for Prevention of Non-Communicable Disease, Qazvin University of Medical Sciences, Qazvin, Iran.
Hossein PiriCellular and Molecular Research Center, Research Institute for Prevention of Non-Communicable Disease, Qazvin University of Medical Sciences, Qazvin, Iran.
Babak RahmaniStudent Research Committee, Qazvin University of Medical Sciences, Qazvin, Iran. b.rahmanigene@gmail.com.
Qazvin University of Medical Sciences · IRAhvaz Jundishapur University of Medical Sciences · IRHormozgan University · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The orexin/hypocretin receptor type 1 (OX1R) plays a crucial role in regulating various physiological functions, especially feeding behavior, addiction, and reward. Genetic variations in the OX1R have been associated with several neurological disorders. In this study, we utilized a combination of sequence and structure-based computational tools to identify the most deleterious missense single nucleotide polymorphisms (SNPs) in the OX1R gene. Our findings revealed four highly conserved and structurally destabilizing missense SNPs, namely R144C, I148N, S172W, and A297D, located in the GTP-binding domain. Molecular dynamics simulations analysis demonstrated that all four most detrimental mutant proteins altered the overall structural flexibility and dynamics of OX1R protein, resulting in significant changes in the structural organization and motion of the protein. These findings provide valuable insights into the impact of missense SNPs on OX1R function loss and their potential contribution to the development of neurological disorders, thereby guiding future research in this field.

Indexed as

Behavior, AddictiveNervous System DiseasesHumansMolecular Dynamics SimulationMorphogenesisOrexin ReceptorsPolymorphism, Single NucleotideOrexin Receptors

Identifiers

PMID38191899
PMCPMC10774445
OpenAlexW4390675573

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.