Evidence map›Paper›PMID 38191557›Full record

ArticleNature communications2024

Mechanism-centric regulatory network identifies NME2 and MYC programs as markers of Enzalutamide resistance in CRPC.

Sukanya Panja, Mihai Ioan Truica, Christina Y Yu, Vamshi Saggurthi, Michael W Craige, Katie Whitehead, Mayra V Tuiche, Aymen Al-Saadi, Riddhi Vyas, Shridar Ganesan and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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  10. Histidine Phosphorylation: Protein Kinases and Phosphatases.International journal of molecular sciences · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 1 country.

Sukanya Panja *Department of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.
Mihai Ioan Truica *Department of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0002-0866-1407
Christina Y YuDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.ORCID 0000-0002-4165-6781
Vamshi SaggurthiDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.ORCID 0009-0005-1883-5588
Michael W CraigeDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.ORCID 0000-0002-5548-0668
Katie WhiteheadDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.
Mayra V TuicheDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.ORCID 0000-0001-6865-2492
Aymen Al-SaadiDepartment of Electrical and Computer Engineering, Rutgers School of Engineering, New Brunswick, NJ, 08854, USA.
Riddhi VyasDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.
Shridar GanesanRutgers Cancer Institute of New Jersey, New Brunswick, NJ, 08901, USA.
Suril GohelDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.
Frederick CoffmanDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.
James S ParrottDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA.ORCID 0000-0003-3486-9567
Songhua QuanDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.
Shantenu JhaDepartment of Electrical and Computer Engineering, Rutgers School of Engineering, New Brunswick, NJ, 08854, USA.
Isaac KimRutgers Cancer Institute of New Jersey, New Brunswick, NJ, 08901, USA.
Edward SchaefferDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0003-0699-1899
Vishal KothariDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA. vkothari@pliantrx.com.ORCID 0000-0001-7453-1435
Sarki A AbdulkadirDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA. sarki.abdulkadir@northwestern.edu.ORCID 0000-0003-2963-2899
Antonina MitrofanovaDepartment of Health Informatics, Rutgers School of Health Professions, Newark, NJ, 07107, USA. amitrofa@shp.rutgers.edu.ORCID 0000-0003-0671-6512
Rutgers, The State University of New Jersey · USNorthwestern University · US

Funding

Targeting FOXA1-downstream pathways: a novel therapeutic strategy for castration-resistant prostate cancerP50CA180995 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI YANG, XIMING J · 2015 to 2025
$19.9M
Small molecule probes of MYC stability and function intumorigenesisR01CA257258 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ABDULKADIR, SARKI A., CHAKRAVARTI, DEBABRATA · 2021 to 2025
$2.8M
Generalizable biomedical informatics strategies for predictive modeling of treatment responseR01LM013236 · NLM · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI MITROFANOVA, ANTONINA · 2020 to 2023
$1.3M
Elucidation of a structural rationale for the binding of Myc by small molecule inhibitorsF30CA250196 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI TRUICA, MIHAI IOAN · 2020 to 2023
$194k
NCI NIH HHS F30 CA250196NCI NIH HHS P50 CA180995NCI NIH HHS R01 CA257258NLM NIH HHS R01 LM013236
6 · The paper itself

Abstract

Heterogeneous response to Enzalutamide, a second-generation androgen receptor signaling inhibitor, is a central problem in castration-resistant prostate cancer (CRPC) management. Genome-wide systems investigation of mechanisms that govern Enzalutamide resistance promise to elucidate markers of heterogeneous treatment response and salvage therapies for CRPC patients. Focusing on the de novo role of MYC as a marker of Enzalutamide resistance, here we reconstruct a CRPC-specific mechanism-centric regulatory network, connecting molecular pathways with their upstream transcriptional regulatory programs. Mining this network with signatures of Enzalutamide response identifies NME2 as an upstream regulatory partner of MYC in CRPC and demonstrates that NME2-MYC increased activities can predict patients at risk of resistance to Enzalutamide, independent of co-variates. Furthermore, our experimental investigations demonstrate that targeting MYC and its partner NME2 is beneficial in Enzalutamide-resistant conditions and could provide an effective strategy for patients at risk of Enzalutamide resistance and/or for patients who failed Enzalutamide treatment.

Indexed as

Drug Resistance, NeoplasmProstatic Neoplasms, Castration-ResistantAndrogen Receptor AntagonistsBenzamidesHumansMaleNitrilesNM23 Nucleoside Diphosphate KinasesPhenylthiohydantoinSignal TransductionAndrogen Receptor AntagonistsBenzamidesenzalutamideNitrilesNM23 Nucleoside Diphosphate KinasesNME2 protein, humanPhenylthiohydantoin

Identifiers

PMID38191557
PMCPMC10774320
OpenAlexW4390670020

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.