Evidence map›Paper›PMID 38190231›Full record

ArticleGenome biology and evolution2024

Chromosome-Level Genome Assembly and Annotation of a Periodical Cicada Species: Magicicada septendecula.

Jonas Bush, Cynthia Webster, Jill Wegrzyn, Chris Simon, Edward Wilcox, Ruqayya Khan, David Weisz, Olga Dudchenko, Erez Lieberman Aiden, Paul Frandsen

Abstract read
In one paragraph

Article in Genome biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jonas BushHuck Life Sciences Institute, The Pennsylvania State University, State College, PA, USA.ORCID 0009-0003-6332-0474
Cynthia WebsterDepartment of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA.
Jill WegrzynDepartment of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA.
Chris SimonDepartment of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA.
Edward WilcoxDepartment of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA.
Ruqayya KhanThe Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
David WeiszThe Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Olga DudchenkoThe Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Erez Lieberman AidenThe Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Paul FrandsenDepartment of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA.ORCID 0000-0002-4801-7579

Funding

Center for Genome ImagingRM1HG011016 · NHGRI · HARVARD MEDICAL SCHOOL · PI WU, CHAO-TING · 2021 to 2025
$12.2M
GENOME WIDE MAPPING OF LOOPS USING IN SITU HI-CUM1HG009375 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI LIEBERMAN-AIDEN, EREZ · 2017 to 2021
$4.7M
NHGRI NIH HHS RM1 HG011016NHGRI NIH HHS UM1 HG009375NIH HHS
6 · The paper itself

Abstract

We present a high-quality assembly and annotation of the periodical cicada species, Magicicada septendecula (Hemiptera: Auchenorrhyncha: Cicadidae). Periodical cicadas have a significant ecological impact, serving as a food source for many mammals, reptiles, and birds. Magicicada are well known for their massive emergences of 1 to 3 species that appear in different locations in the eastern United States nearly every year. These year classes ("broods") emerge dependably every 13 or 17 yr in a given location. Recently, it has become clear that 4-yr early or late emergences of a sizeable portion of a population are an important part of the history of brood formation; however, the biological mechanisms by which they track the passage of time remain a mystery. Using PacBio HiFi reads in conjunction with Hi-C proximity ligation data, we have assembled and annotated the first whole genome for a periodical cicada, an important resource for future phylogenetic and comparative genomic analysis. This also represents the first quality genome assembly and annotation for the Hemipteran superfamily Cicadoidea. With a scaffold N50 of 518.9 Mb and a complete BUSCO score of 96.7%, we are confident that this assembly will serve as a vital resource toward uncovering the genomic basis of periodical cicadas' long, synchronized life cycles and will provide a robust framework for further investigations into these insects.

Indexed as

HemipteraAnimalsChromosomesGenomicsLife Cycle StagesMammalsPhylogenyUnited StatesannotationassemblycicadagenomicsHemipteraHiC

Identifiers

PMID38190231
PMCPMC10799293

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.