Evidence map›Paper›PMID 38190016›Full record

ArticleActa parasitologica2024

Sequence and Haplotype Analyses of Ligula intestinalis in Acanthobrama marmid (Cyprinidae) in Turkey.

Harun Kaya Kesik, Figen Celik, Cebrahil Turk, Seyma Gunyakti Kilinc, Sami Simsek, Abdurrahman Gul

Open access · hybridAbstract read
In one paragraph

Article in Acta parasitologica, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Harun Kaya KesikDepartment of Parasitology, Faculty of Veterinary Medicine, University of Bingol, 12000, Bingol, Turkey. hkesik@bingol.edu.tr.ORCID https://orcid.org/0000-0002-8480-8597
Figen CelikDepartment of Parasitology, Faculty of Veterinary Medicine, University of Firat, 23119, Elazig, Turkey.
Cebrahil TurkDepartment of Fisheries, Genç Vocational School, Bingol University, 12500, Bingol, Turkey.
Seyma Gunyakti KilincDepartment of Parasitology, Faculty of Veterinary Medicine, University of Bingol, 12000, Bingol, Turkey.
Sami SimsekDepartment of Parasitology, Faculty of Veterinary Medicine, University of Firat, 23119, Elazig, Turkey.
Abdurrahman GulDepartment of Parasitology, Faculty of Veterinary Medicine, University of Bingol, 12000, Bingol, Turkey.
Bingöl University · TRFırat University · TR

Funding

Bingol University Scientific Research Projects Unit BAP-VF.2021.00.002
6 · The paper itself

Abstract

purposeLigulosis caused by Ligula intestinalis adversely affects the fisheries carried out in the lakes and ponds, causing economic losses in the fish industry. In this study, it was aimed to reveal the molecular characterization of L. intestinalis isolates obtained from woodfish (Acanthobrama marmid) in Keban Dam Lake in Elazig province of Turkey by using mt-CO1 gene sequences and to determine the genetic differences and haplotypes between the isolates.

methodsIn the examination made in terms of L. intestinalis, the intestine of the fish was opened with the help of fine-tipped scissors, the contents were allowed to come out, and the parasites were taken into a petri dish containing phosphate buffered saline (PBS). Then, L. intestinalis plerocercoids were taken into 15 ml falcon tubes containing 70% ethanol and stored at - 20 °C until further analysis. From each isolate, total gDNA was extracted from the plerocercoids. A partial (480 bp) mt-CO1 gene was amplified by PCR and sequenced unidirectionally. The final size of the trimmed sequences was 392 bp for 43 sequences. Sequence and haplotype analyses were performed, followed by phylogenetic analyses.

resultsAll isolates were confirmed as L. intestinalis by BLAST analysis. In addition, 87 nucleotide mutation positions were determined among 43 CO1 gene sequences. As a result of the haplotype network performed for the mt-CO1 gene region of L. intestinalis isolates; arranged in a star-like configuration with the main haplotype (Hap05), separated from other haplotypes by 1-6 mutation steps, and 29 haplotypes were identified, covering 13.9% (6/43) of the total isolates. Also, 75 variable (polymorphic) sites were determined, 52 of which were parsimony informative sites.

conclusionsThe molecular characterization of L. intestinalis in woodfish (A. marmid) was identified for the first time in Turkey.

Indexed as

CyprinidaeFish DiseasesHaplotypesPhylogenyAnimalsCestode InfectionsDNA, HelminthElectron Transport Complex IVSequence Analysis, DNATurkeyDNA, HelminthElectron Transport Complex IVFishHaplotypeLigula intestinalisLigulosisTurkey

Identifiers

PMID38190016
PMCPMC11001722
OpenAlexW4390673633

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.