Evidence map›Paper›PMID 38189406›Full record

ArticleeLife2024

Gle1 is required for tRNA to stimulate Dbp5 ATPase activity in vitro and promote Dbp5-mediated tRNA export in vivo in

Arvind Arul Nambi Rajan, Ryuta Asada, Ben Montpetit

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Molecular Structure of the mRNA Export Factor Gle1 fromInternational journal of molecular sciences · 2025
    Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Arvind Arul Nambi RajanBiochemistry, Molecular, Cellular and Developmental Biology Graduate Group, University of California, Davis, Davis, United States.ORCID https://orcid.org/0000-0003-3559-1421
Ryuta AsadaDepartment of Viticulture and Enology, University of California, Davis, Davis, United States.ORCID https://orcid.org/0000-0001-8360-6355
Ben MontpetitBiochemistry, Molecular, Cellular and Developmental Biology Graduate Group, University of California, Davis, Davis, United States.ORCID https://orcid.org/0000-0002-8317-983X
University of California, Davis · US

Funding

UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
Mechanism and regulation of nuclear RNA exportR35GM145328 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Benjamen H.W. Montpetit · 2022 to 2026
$2.2M
NIGMS NIH HHS GM007377NIGMS NIH HHS R35 GM145328NIGMS NIH HHS R35GM145328NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

Cells must maintain a pool of processed and charged transfer RNAs (tRNA) to sustain translation capacity and efficiency. Numerous parallel pathways support the processing and directional movement of tRNA in and out of the nucleus to meet this cellular demand. Recently, several proteins known to control messenger RNA (mRNA) transport were implicated in tRNA export. The DEAD-box Protein 5, Dbp5, is one such example. In this study, genetic and molecular evidence demonstrates that Dbp5 functions parallel to the canonical tRNA export factor Los1. In vivo co-immunoprecipitation data further shows Dbp5 is recruited to tRNA independent of Los1, Msn5 (another tRNA export factor), or Mex67 (mRNA export adaptor), which contrasts with Dbp5 recruitment to mRNA that is abolished upon loss of Mex67 function. However, as with mRNA export, overexpression of Dbp5 dominant-negative mutants indicates a functional ATPase cycle and that binding of Dbp5 to Gle1 is required by Dbp5 to direct tRNA export. Biochemical characterization of the Dbp5 catalytic cycle demonstrates the direct interaction of Dbp5 with tRNA (or double-stranded RNA) does not activate Dbp5 ATPase activity, rather tRNA acts synergistically with Gle1 to fully activate Dbp5. These data suggest a model where Dbp5 directly binds tRNA to mediate export, which is spatially regulated via Dbp5 ATPase activation at nuclear pore complexes by Gle1.

Indexed as

Nuclear Pore Complex ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesCatalysisDEAD-box RNA HelicasesNucleocytoplasmic Transport ProteinsRNA, MessengerRNA, TransferAdenosine TriphosphatasesDBP5 protein, S cerevisiaeDEAD-box RNA HelicasesGLE1 protein, S cerevisiaeLos1 protein, S cerevisiaeNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsRNA, MessengerRNA, TransferSaccharomyces cerevisiae ProteinschromosomesDbp5DDX19gene expressionGle1Mex67mRNA exportS. cerevisiaetRNA export

Identifiers

PMID38189406
PMCPMC10945473
OpenAlexW4386135287

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.