Evidence map›Paper›PMID 38188304›Full record

ReviewFrontiers in oncology2023

Viral oncogenes, viruses, and cancer: a third-generation sequencing perspective on viral integration into the human genome.

Ruichen Ye, Angelina Wang, Brady Bu, Pengxiang Luo, Wenjun Deng, Xinyi Zhang, Shanye Yin

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Viral zoonosis and human cancer: a perspective.Infectious agents and cancer · 2025
    Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Evolutionary View of Liver Pathology.Evolutionary applications · 2024
    Review
  12. Article
  13. Tumor Antigens beyond the Human Exome.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 2 countries.

Ruichen Ye *Department of Pathology, Albert Einstein College of Medicine, Bronx, NY, United States.
Angelina Wang *Tufts Friedman School of Nutrition, Boston, MA, United States.
Brady Bu *Horace Mann School, Bronx, NY, United States.
Pengxiang LuoTongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Wenjun DengClinical Proteomics Research Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA, United States.
Xinyi ZhangDepartment of Respiratory Diseases, The Second Affiliated Hospital of Nanchang University, Nanchang, China.
Shanye YinDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY, United States.
Albert Einstein College of Medicine · USHorace Mann School · USHuazhong University of Science and Technology · CNMassachusetts General Hospital · USNanchang University · CNTufts University · US

Funding

Defining the impact of mutational drivers on the immune microenvironment of CLLR21CA267527 · NCI · DANA-FARBER CANCER INST · PI WU, CATHERINE JU-YING, YIN, SHANYE · 2022 to 2023
$454k
NCI NIH HHS R21 CA267527
6 · The paper itself

Abstract

The link between viruses and cancer has intrigued scientists for decades. Certain viruses have been shown to be vital in the development of various cancers by integrating viral DNA into the host genome and activating viral oncogenes. These viruses include the Human Papillomavirus (HPV), Hepatitis B and C Viruses (HBV and HCV), Epstein-Barr Virus (EBV), and Human T-Cell Leukemia Virus (HTLV-1), which are all linked to the development of a myriad of human cancers. Third-generation sequencing technologies have revolutionized our ability to study viral integration events at unprecedented resolution in recent years. They offer long sequencing capabilities along with the ability to map viral integration sites, assess host gene expression, and track clonal evolution in cancer cells. Recently, researchers have been exploring the application of Oxford Nanopore Technologies (ONT) nanopore sequencing and Pacific BioSciences (PacBio) single-molecule real-time (SMRT) sequencing in cancer research. As viral integration is crucial to the development of cancer via viruses, third-generation sequencing would provide a novel approach to studying the relationship interlinking viral oncogenes, viruses, and cancer. This review article explores the molecular mechanisms underlying viral oncogenesis, the role of viruses in cancer development, and the impact of third-generation sequencing on our understanding of viral integration into the human genome.

Indexed as

cancer sequencingnanoporePacBiothird generation sequencingviral integration

Identifiers

PMID38188304
PMCPMC10768168
OpenAlexW4390057034

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.