Evidence map›Paper›PMID 38187618›Full record

ArticlebioRxiv : the preprint server for biology2023

Effects of parental age and polymer composition on short tandem repeat

Michael E Goldberg, Michelle D Noyes, Evan E Eichler, Aaron R Quinlan, Kelley Harris

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Michael E GoldbergDepartment of Genome Sciences, University of Washington, 3720 15 Ave NE, Seattle, WA, 98195.ORCID 0000-0003-3310-6349
Michelle D NoyesDepartment of Genome Sciences, University of Washington, 3720 15 Ave NE, Seattle, WA, 98195.
Evan E EichlerDepartment of Genome Sciences, University of Washington, 3720 15 Ave NE, Seattle, WA, 98195.ORCID 0000-0002-8246-4014
Aaron R QuinlanDepartments of Human Genetics and Biomedical Informatics, University of Utah, 15 S 2030 E, Salt Lake City, UT, 84112.
Kelley HarrisDepartment of Genome Sciences, University of Washington, 3720 15 Ave NE, Seattle, WA, 98195.ORCID 0000-0003-0302-2523
University of Washington · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAHoward Hughes Medical Institute · USUniversity of Utah · US

Funding

Mechanisms of Brain Dysmorphology in MN1 C-Terminal Truncation Syndrome, a Novel Intellectual Developmental Disability Disorder P50HD103524 · NICHD · UNIVERSITY OF WASHINGTON · PI Sandra E Juul · 2020 to 2026
$9.9M
Sporadic Mutations and Autism Spectrum DisordersR01MH101221 · NIMH · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2013 to 2025
$9.2M
GEMS: Genomic approach to connecting Elevated germline Mutation rates with male infertility and Somatic healthR01HD106112 · NICHD · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI ASTON, KENNETH IVAN, HOTALING, JAMES · 2021 to 2025
$3.8M
Training Program in Genomic MedicineT32HG008962 · NHGRI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Lynn Jorde, Aaron R Quinlan · 2016 to 2026
$3.0M
Investigating the landscape and genetic architecture of germline mutagenesisR35GM133428 · NIGMS · UNIVERSITY OF WASHINGTON · PI Kelley Harris · 2019 to 2026
$2.8M
Predoctoral Research Training in Statistical Genetics Administrative SupplementT32GM081062 · NIGMS · UNIVERSITY OF WASHINGTON · PI THORNTON, TIMOTHY ALVIN · 2007 to 2021
$2.4M
NHGRI NIH HHS T32 HG008962NICHD NIH HHS P50 HD103524NICHD NIH HHS R01 HD106112NIGMS NIH HHS R35 GM133428NIGMS NIH HHS T32 GM081062NIMH NIH HHS R01 MH101221
6 · The paper itself

Abstract

Short tandem repeats (STRs) are hotspots of genomic variability in the human germline because of their high mutation rates, which have long been attributed largely to polymerase slippage during DNA replication. This model suggests that STR mutation rates should scale linearly with a father's age, as progenitor cells continually divide after puberty. In contrast, it suggests that STR mutation rates should not scale with a mother's age at her child's conception, since oocytes spend a mother's reproductive years arrested in meiosis II and undergo a fixed number of cell divisions that are independent of the age at ovulation. Yet, mirroring recent findings, we find that STR mutation rates covary with paternal and maternal age, implying that some STR mutations are caused by DNA damage in quiescent cells rather than the classical mechanism of polymerase slippage in replicating progenitor cells. These results also echo the recent finding that DNA damage in quiescent oocytes is a significant source of

Indexed as

DNA replicationhuman evolutionmolecular evolutionmutation ratetandem repeats

Identifiers

PMID38187618
PMCPMC10769404
OpenAlexW4390154711

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.