Evidence map›Paper›PMID 38187229›Full record

ArticleHeliyon2024

Identification of the transcriptome signatures and immune-inflammatory responses in postmenopausal osteoporosis.

Pan Gao, Xiaoguang Pan, Shang Wang, Sijia Guo, Zhanying Dong, Zhefeng Wang, Xue Liang, Yan Chen, Fang Fang, Ling Yang and 6 more

Abstract read
In one paragraph

Article in Heliyon, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Pan GaoCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
Xiaoguang PanQingdao-Europe Advanced Institute for Life Sciences, BGI-Shenzhen, Qingdao 266555, China.
Shang WangDepartment of Spine Surgery, Shenzhen People's Hospital, The First Affiliated Hospital, Southern University of Science and Technology, Shenzhen 518020, Guangdong, China.
Sijia GuoBGI Research, Shenzhen 518083, China.
Zhanying DongBGI Research, Shenzhen 518083, China.
Zhefeng WangDepartment of Spine Surgery, Shenzhen People's Hospital, The First Affiliated Hospital, Southern University of Science and Technology, Shenzhen 518020, Guangdong, China.
Xue LiangQingdao-Europe Advanced Institute for Life Sciences, BGI-Shenzhen, Qingdao 266555, China.
Yan ChenBGI Research, Shenzhen 518083, China.
Fang FangBGI Research, Shenzhen 518083, China.
Ling YangBGI Research, Shenzhen 518083, China.
Jinrong HuangBGI Research, Shenzhen 518083, China.
Chenxi ZhangBGI Research, Shenzhen 518083, China.
Conghui LiBGI Research, Shenzhen 518083, China.
Yonglun LuoCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
Songlin PengDepartment of Spine Surgery, Shenzhen People's Hospital, The First Affiliated Hospital, Southern University of Science and Technology, Shenzhen 518020, Guangdong, China.
Fengping XuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Postmenopausal osteoporosis is the most common type of osteoporosis in women. To date, little is known about their transcriptome signatures, although biomarkers from peripheral blood mononuclear cells are attractive for postmenopausal osteoporosis diagnoses. Here, we performed bulk RNA sequencing of 206 samples (124 postmenopausal osteoporosis and 82 normal samples) and described the clinical phenotypic characteristics of postmenopausal women. We then highlighted the gene set enrichment analyses between the extreme T-score group and the heathy control group, revealing that some immune-inflammatory responses were enhanced in postmenopausal osteoporosis, with representative pathways including the mitogen-activated protein kinase (NES = 1.6, FDR <0.11) pathway and B_CELL_RECEPTOR (NES = 1.69, FDR <0.15) pathway. Finally, we developed a combined risk prediction model based on lasso-logistic regression to predict postmenopausal osteoporosis, which combined eleven genes (

Indexed as

Immune-inflammatory responsesPostmenopausal osteoporosisRisk prediction modelRNA sequencingTranscriptome signatures

Identifiers

PMID38187229
PMCPMC10770509

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.