Evidence map›Paper›PMID 38185711›Full record

ArticleNature communications2024

Silica-associated proteins from hexactinellid sponges support an alternative evolutionary scenario for biomineralization in Porifera.

Katsuhiko Shimizu, Michika Nishi, Yuto Sakate, Haruka Kawanami, Tomohiro Bito, Jiro Arima, Laia Leria, Manuel Maldonado

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Co-option of Lysosomal Machinery for Sponge Biosilicification.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Chemical characterization of CProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Phosphatic stromatoporoid sponges formed reefs ~480 Mya.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Silactins and Structural Diversity of Biosilica in Sponges.Biomimetics (Basel, Switzerland) · 2024
    Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Katsuhiko ShimizuPlatform for Community-based Research and Education, Tottori University, 4-101, Koyama-cho, Minami, Tottori, 680-8550, Japan. kshimizu@tottori-u.ac.jp.
Michika NishiDivision of Agricultural Science, Graduate studies of Sustainability Science, Tottori University Graduate School, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan.
Yuto SakateDivision of Agricultural Science, Graduate studies of Sustainability Science, Tottori University Graduate School, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan.
Haruka KawanamiDepartment of Life Environmental Agriculture, Faculty of Agriculture, Tottori University, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan.
Tomohiro BitoDepartment of Life Environmental Agriculture, Faculty of Agriculture, Tottori University, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan.
Jiro ArimaDepartment of Life Environmental Agriculture, Faculty of Agriculture, Tottori University, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan.
Laia LeriaSponge Ecobiology and Biotechnology Group, Center for Advanced Studies of Blanes (CEAB, CSIC), Blanes, 17300, Spain.ORCID 0000-0002-9617-5547
Manuel MaldonadoSponge Ecobiology and Biotechnology Group, Center for Advanced Studies of Blanes (CEAB, CSIC), Blanes, 17300, Spain. maldonado@ceab.csic.es.ORCID 0000-0002-7447-4212
Tottori University · JPCentre d'Estudis Avançats de Blanes · ES

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) RIA-679849-2Ministry of Education, Culture, Sports, Science and Technology (MEXT) 19K05164
6 · The paper itself

Abstract

Metazoans use silicon traces but rarely develop extensive silica skeletons, except for the early-diverging lineage of sponges. The mechanisms underlying metazoan silicification remain incompletely understood, despite significant biotechnological and evolutionary implications. Here, the characterization of two proteins identified from hexactinellid sponge silica, hexaxilin and perisilin, supports that the three classes of siliceous sponges (Hexactinellida, Demospongiae, and Homoscleromorpha) use independent protein machineries to build their skeletons, which become non-homologous structures. Hexaxilin forms the axial filament to intracellularly pattern the main symmetry of the skeletal parts, while perisilin appears to operate in their thickening, guiding extracellular deposition of peripheral silica, as does glassin, a previously characterized hexactinellid silicifying protein. Distant hexaxilin homologs occur in some bilaterians with siliceous parts, suggesting putative conserved silicifying activity along metazoan evolution. The findings also support that ancestral Porifera were non-skeletonized, acquiring silica skeletons only after diverging into major classes, what reconciles molecular-clock dating and the fossil record.

Indexed as

PoriferaSilicon DioxideAnimalsBandagesBiomineralizationSiliconSiliconSilicon Dioxide

Identifiers

PMID38185711
PMCPMC10772126
OpenAlexW4390651005

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.