Evidence map›Paper›PMID 38183104›Full record

ArticlePlant methods2024

Mitochondrial DNA editing in potato through mitoTALEN and mitoTALECD: molecular characterization and stability of editing events.

Alessandro Nicolia, Nunzia Scotti, Nunzio D'Agostino, Giovanna Festa, Lorenza Sannino, Gaetano Aufiero, Shin-Ichi Arimura, Teodoro Cardi

Abstract read
In one paragraph

Article in Plant methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alessandro NicoliaCREA, Research Centre for Vegetable and Ornamental Crops, via Cavalleggeri 25, 84098, Pontecagnano, SA, Italy.ORCID http://orcid.org/0000-0002-5420-5218
Nunzia ScottiCNR-IBBR, Institute of Biosciences and BioResources, 80055, Portici, NA, Italy.ORCID http://orcid.org/0000-0002-7792-5955
Nunzio D'AgostinoDepartment of Agricultural Sciences, University of Naples Federico II, 80055, Portici, Italy.ORCID http://orcid.org/0000-0001-9840-3817
Giovanna FestaCREA, Research Centre for Vegetable and Ornamental Crops, via Cavalleggeri 25, 84098, Pontecagnano, SA, Italy.
Lorenza SanninoCNR-IBBR, Institute of Biosciences and BioResources, 80055, Portici, NA, Italy.
Gaetano AufieroDepartment of Agricultural Sciences, University of Naples Federico II, 80055, Portici, Italy.
Shin-Ichi ArimuraLaboratory of Plant Molecular Genetics, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-9537-1626
Teodoro CardiCREA, Research Centre for Vegetable and Ornamental Crops, via Cavalleggeri 25, 84098, Pontecagnano, SA, Italy. teodoro.cardi@cnr.it.ORCID http://orcid.org/0000-0001-9418-8849

Funding

Japan Society for the Promotion of Science 19KK0391Japan Society for the Promotion of Science 20H05680Japan Society for the Promotion of Science JPJSCCA20230008
6 · The paper itself

Abstract

backgroundThe aim of this study was to evaluate and characterize the mutations induced by two TALE-based approaches, double-strand break (DSB) induction by the FokI nuclease (mitoTALEN) and targeted base editing by the DddA cytidine deaminase (mitoTALECD), to edit, for the first time, the mitochondrial genome of potato, a vegetatively propagated crop. The two methods were used to knock out the same mitochondrial target sequence (orf125).

resultsTargeted chondriome deletions of different sizes (236-1066 bp) were induced by mitoTALEN due to DSB repair through ectopic homologous recombination of short direct repeats (11-12 bp) present in the target region. Furthermore, in one case, the induced DSB and subsequent repair resulted in the amplification of an already present substoichiometric molecule showing a 4288 bp deletion spanning the target sequence. With the mitoTALECD approach, both nonsense and missense mutations could be induced by base substitution. The deletions and single nucleotide mutations were either homoplasmic or heteroplasmic. The former were stably inherited in vegetative offspring.

conclusionsBoth editing approaches allowed us to obtain plants with precisely modified mitochondrial genomes at high frequency. The use of the same plant genotype and mtDNA region allowed us to compare the two methods for efficiency, accuracy, type of modifications induced and stability after vegetative propagation.

Indexed as

Base editingChondriomeDouble strand breakGenome editingHomologous recombinationMitochondrial DNA editingMitoTALECDMitoTALENSolanum tuberosum

Identifiers

PMID38183104
PMCPMC10768376

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.