Evidence map›Paper›PMID 38182794›Full record

SynthesisCommunications biology2024

Multi-ancestry genome-wide meta-analysis identifies novel basal cell carcinoma loci and shared genetic effects with squamous cell carcinoma.

Hélène Choquet, Chen Jiang, Jie Yin, Yuhree Kim, Thomas J Hoffmann, 23andMe Research Team, Eric Jorgenson, Maryam M Asgari

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. A blood- and brain-based EWAS of smoking.Nature communications · 2025
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Hélène ChoquetKaiser Permanente Northern California (KPNC), Division of Research, Oakland, CA, USA. Helene.Choquet@kp.org.ORCID 0000-0001-9839-8667
Chen JiangKaiser Permanente Northern California (KPNC), Division of Research, Oakland, CA, USA.
Jie YinKaiser Permanente Northern California (KPNC), Division of Research, Oakland, CA, USA.ORCID 0000-0002-4990-0777
Yuhree KimDepartment of Dermatology, Massachusetts General Hospital, Boston, MA, USA.
Thomas J HoffmannInstitute for Human Genetics, University of California, San Francisco (UCSF), San Francisco, CA, USA.ORCID 0000-0001-6893-4449
23andMe Research Team
Eric JorgensonRegeneron Genetics Center, Tarrytown, NY, USA.ORCID 0000-0002-5829-8191
Maryam M AsgariDepartment of Dermatology, Massachusetts General Hospital, Boston, MA, USA.
23andMe (United States) · USKaiser Permanente · USHarvard University · USRegeneron (United States) · USUniversity of California, San Francisco · US

Funding

A Resource for Genetic Epidemiology Research in Adult Health and AgingRC2AG036607 · NIA · KAISER FOUNDATION RESEARCH INSTITUTE · PI RISCH, NEIL J., SCHAEFER, CATHERINE ANN · 2009 to 2010
$24.8M
The Role of Genetic Risk Factors in Keratinocyte Carcinoma SusceptibilityR01CA241623 · NCI · KAISER FOUNDATION RESEARCH INSTITUTE · PI ASGARI, MARYAM MANDANA, CHOQUET, HELENE · 2020 to 2025
$1.7M
NCI NIH HHS R01 CA241623NIA NIH HHS RC2 AG036607
6 · The paper itself

Abstract

Basal cell carcinoma (BCC) is one of the most common malignancies worldwide, yet its genetic determinants are incompletely defined. We perform a European ancestry genome-wide association (GWA) meta-analysis and a Hispanic/Latino ancestry GWA meta-analysis and meta-analyze both in a multi-ancestry GWAS meta-analysis of BCC, totaling 50,531 BCC cases and 762,234 controls from four cohorts (GERA, Mass-General Brigham Biobank, UK Biobank, and 23andMe research cohort). Here we identify 122 BCC-associated loci, of which 36 were novel, and subsequently fine-mapped these associations. We also identify an association of the well-known pigment gene SLC45A2 as well as associations at RCC2 and CLPTM1L with BCC in Hispanic/Latinos. We examine these BCC loci for association with cutaneous squamous cell carcinoma (cSCC) in 16,407 SCC cases and 762,486 controls of European ancestry, and 33 SNPs show evidence of association. Our study findings provide important insights into the genetic basis of BCC and cSCC susceptibility.

Indexed as

Basal Cell CarcinomaCarcinoma, Squamous CellSkin NeoplasmsGenome-Wide Association StudyHumansPolymorphism, Single Nucleotide

Identifiers

PMID38182794
PMCPMC10770328
OpenAlexW4390617099

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.