Evidence map›Paper›PMID 38182597›Full record

ArticleNature communications2024

Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.

Anastasiia Chaban, Leonid Minakhin, Ekaterina Goldobina, Brain Bae, Yue Hao, Sergei Borukhov, Leena Putzeys, Maarten Boon, Florian Kabinger, Rob Lavigne and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Structural basis of SARS-CoV-2 polymerase inhibition by nonnucleoside inhibitor HeE1-2Tyr.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 6 countries.

Anastasiia Chaban *Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, 121205, Russia.ORCID 0000-0001-7024-2724
Leonid Minakhin *Waksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, 08854, USA.
Ekaterina GoldobinaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, 121205, Russia.
Brain BaeDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Yue HaoDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Sergei BorukhovDepartment of Cell Biology and Neuroscience, Rowan University School of Osteopathic Medicine at Stratford, Stratford, NJ, 08084-1489, USA.ORCID 0000-0002-3517-3003
Leena PutzeysDepartment of Biosystems, Laboratory of Gene Technology, KU Leuven, Leuven, 3001, Belgium.
Maarten BoonDepartment of Biosystems, Laboratory of Gene Technology, KU Leuven, Leuven, 3001, Belgium.
Florian KabingerDepartment of Molecular Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, 37077, Germany.ORCID 0000-0002-3053-8253
Rob LavigneDepartment of Biosystems, Laboratory of Gene Technology, KU Leuven, Leuven, 3001, Belgium.ORCID 0000-0001-7377-1314
Kira S MakarovaNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.ORCID 0000-0002-8174-2844
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.ORCID 0000-0003-3943-8299
Satish K NairDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. snair@illinois.edu.ORCID 0000-0003-1790-1334
Shunsuke TagamiRIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan. shunsuke.tagami@riken.jp.ORCID 0000-0002-1720-3627
Konstantin SeverinovWaksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, 08854, USA. severik@waksman.rutgers.edu.ORCID 0000-0001-9706-450X
Maria L SokolovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, 121205, Russia. maria.sokolova@mpinat.mpg.de.ORCID 0000-0001-7251-6952
KU Leuven · BESkolkovo Institute of Science and Technology · RUUniversity of Illinois Urbana-Champaign · USNational Institutes of Health · USRutgers, The State University of New Jersey · USMax Planck Institute for Multidisciplinary SciencesRIKEN Center for Biosystems Dynamics Research · JPRowan University · US

Funding

Finding Protein Sequence Motifs--Methods And ApplicationsZIALM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$10.6M
Phage-induced modifications of RNA polymeraseR01GM059295 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI SEVERINOV, KONSTANTIN V · 1999 to 2013
$4.5M
Structure, Function, and Engineering of RiPP Biosynthetic EnzymesR35GM151874 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Satish K Nair · 2024 to 2026
$1.8M
NIGMS NIH HHS R01 GM059295NIGMS NIH HHS R35 GM151874
6 · The paper itself

Abstract

Thermus thermophilus bacteriophage P23-45 encodes a giant 5,002-residue tail tape measure protein (TMP) that defines the length of its extraordinarily long tail. Here, we show that the N-terminal portion of P23-45 TMP is an unusual RNA polymerase (RNAP) homologous to cellular RNAPs. The TMP-fused virion RNAP transcribes pre-early phage genes, including a gene that encodes another, non-virion RNAP, that transcribes early and some middle phage genes. We report the crystal structures of both P23-45 RNAPs. The non-virion RNAP has a crab-claw-like architecture. By contrast, the virion RNAP adopts a unique flat structure without a clamp. Structure and sequence comparisons of the P23-45 RNAPs with other RNAPs suggest that, despite the extensive functional differences, the two P23-45 RNAPs originate from an ancient gene duplication in an ancestral phage. Our findings demonstrate striking adaptability of RNAPs that can be attained within a single virus species.

Indexed as

BacteriophagesPyridinolcarbamateBacterial Typing TechniquesDNA-Directed RNA PolymerasesVirionDNA-Directed RNA PolymerasesPyridinolcarbamate

Identifiers

PMID38182597
PMCPMC10770324
OpenAlexW4390632467

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.