Evidence map›Paper›PMID 38181065›Full record

ArticlePLoS computational biology2024

Differences in boundary behavior in the 3D vertex and Voronoi models.

Elizabeth Lawson-Keister, Tao Zhang, Fatemeh Nazari, François Fagotto, M Lisa Manning

Abstract read
In one paragraph

Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Dynamic forces drive cell and organ morphology changes during embryonic development.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Soft matter mechanics of immune cell aggregates.Journal of the Royal Society, Interface · 2025
    Article
  6. Review
  7. Apico-basal intercalations enable the integrity of curved epithelia.Computational and structural biotechnology journal · 2025
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Elizabeth Lawson-KeisterDepartment of Physics and BioInspired Syracuse, Syracuse University, Syracuse, New York, United States of America.
Tao ZhangSchool of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, China.
Fatemeh NazariSchool of Biomedical Engineering, Ecole Centrale de Lille, Villeneuve-d'Ascq, France.
François FagottoCentre de Recherche en Biologie cellulaire de Montpellier, University of Montpellier and CNRS, Montpellier, France.
M Lisa ManningDepartment of Physics and BioInspired Syracuse, Syracuse University, Syracuse, New York, United States of America.ORCID 0000-0001-7682-2324

Funding

Four-dimensional prediction and quantification of how physical forces impact organogenesis in zebrafishR01HD099031 · NICHD · SYRACUSE UNIVERSITY · PI AMACK, JEFFREY D, MANNING, MARY ELIZABETH LISA · 2020 to 2024
$2.1M
NICHD NIH HHS R01 HD099031
6 · The paper itself

Abstract

An important open question in the modeling of biological tissues is how to identify the right scale for coarse-graining, or equivalently, the right number of degrees of freedom. For confluent biological tissues, both vertex and Voronoi models, which differ only in their representation of the degrees of freedom, have effectively been used to predict behavior, including fluid-solid transitions and cell tissue compartmentalization, which are important for biological function. However, recent work in 2D has hinted that there may be differences between the two models in systems with heterotypic interfaces between two tissue types, and there is a burgeoning interest in 3D tissue models. Therefore, we compare the geometric structure and dynamic sorting behavior in mixtures of two cell types in both 3D vertex and Voronoi models. We find that while the cell shape indices exhibit similar trends in both models, the registration between cell centers and cell orientation at the boundary are significantly different between the two models. We demonstrate that these macroscopic differences are caused by changes to the cusp-like restoring forces introduced by the different representations of the degrees of freedom at the boundary, and that the Voronoi model is more strongly constrained by forces that are an artifact of the way the degrees of freedom are represented. This suggests that vertex models may be more appropriate for 3D simulations of tissues with heterotypic contacts.

Indexed as

Models, BiologicalCell MovementCell Shape

Identifiers

PMID38181065
PMCPMC10796063

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.