Evidence map›Paper›PMID 38180275›Full record

ArticleJournal of medical virology2024

Characterization of integrated hepatitis B virus DNA harboring pre-S mutations in hepatocellular carcinoma patients with ground glass hepatocytes.

Yih-Ping Su, Selena Y Lin, Ih-Jen Su, Yu-Lan Kao, Shih-Chun Shen, Joshua P Earl, Garth D Ehrlich, Cheng-Yi Chen, Wenya Huang, Ying-Hsiu Su and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medical virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Yih-Ping SuDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, Pennsylvania, USA.
Selena Y LinDepartment of Research and Development, JBS Science, Inc., Doylestown, Pennsylvania, USA.
Ih-Jen SuDepartment of Biotechnology, Southern Taiwan University of Science Technology, Tainan, Taiwan.
Yu-Lan KaoDepartment of Translational Medical Sciences, The Baruch S. Blumberg Institute, Doylestown, Pennsylvania, USA.
Shih-Chun ShenDepartment of Translational Medical Sciences, The Baruch S. Blumberg Institute, Doylestown, Pennsylvania, USA.
Joshua P EarlDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, Pennsylvania, USA.
Garth D EhrlichDepartment of Microbiology and Immunology, Department of Otolaryngology-Head and Neck Surgery, Drexel University College of Medicine, Philadelphia, Pennsylvania, USA.
Cheng-Yi ChenDepartment of Cell Biology and Anatomy, College of Medicine, National Cheng Kung University, Tainan, Taiwan.
Wenya HuangDepartment of Medical Laboratory Science and Biotechnology, College of Medicine, National Cheng Kung University, Tainan, Taiwan.
Ying-Hsiu SuDepartment of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, Pennsylvania, USA.
Hung-Wen TsaiDepartment of Pathology, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, Tainan, Taiwan.
Baruch S. Blumberg Institute · USDrexel University · USJBS Science (United States) · USNational Cheng Kung University · TWNational Cheng Kung University Hospital · TW

Funding

Development of a Urine Test for the Early Detection of Liver CancerR44CA165312 · NCI · JBS SCIENCE, INC. · PI LIN, SELENA · 2013 to 2020
$4.9M
Development of cell-free DNA assays for HCC screening and liquid biopsyR01CA202769 · NCI · BARUCH S. BLUMBERG INSTITUTE · PI SU, YING-HSIU · 2016 to 2020
$2.1M
Urine Biomarker Discovery for Early Detection of Liver CancerR01CA125642 · NCI · DREXEL UNIVERSITY · PI SU, YING-HSIU · 2008 to 2010
$1.1M
HBV cccDNA and integrated DNA in HIV coinfection and HBV monoinfectionR56AI179574 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI GUO, HAITAO, LAU, DARYL T · 2023 to 2023
$847k
NCI NIH HHS R01 CA125642NCI NIH HHS R01 CA202769NCI NIH HHS R44 CA165312NIAID NIH HHS R56 AI179574
6 · The paper itself

Abstract

Ground glass hepatocytes (GGHs) have been associated with hepatocellular carcinoma (HCC) recurrence and poor prognosis. We previously demonstrated that pre-S expression in some GGHs is resistant to current hepatitis B virus (HBV) antiviral therapies. This study aimed to investigate whether integrated HBV DNA (iDNA) is the primary HBV DNA species responsible for sustained pre-S expression in GGH after effective antiviral therapy. We characterized 10 sets of micro-dissected, formalin-fixed-paraffin-embedded, and frozen GGH, HCC, and adjacent hepatitis B surface antigen-negative stained tissues for iDNA, pre-S deletions, and the quantity of covalently closed circular DNA. Eight patients had detectable pre-S deletions, and nine had detectable iDNA. Interestingly, eight patients had integrations within the TERT and CCNE1 genes, which are known recurrent integration sites associated with HCC. Furthermore, we observed a recurrent integration in the ABCC13 gene. Additionally, we identified variations in the type and quantity of pre-S deletions within individual sets of tissues by junction-specific PacBio long-read sequencing. The data from long-read sequencing indicate that some pre-S deletions were acquired following the integration events. Our findings demonstrate that iDNA exists in GGH and can be responsible for sustained pre-S expression in GGH after effective antiviral therapy.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsAntiviral AgentsDNA, ViralHepatitis B virusHepatocytesHumansMutationAntiviral AgentsDNA, ViralGGHHBViDNAlong-read sequencingpre-Stumor evolution

Identifiers

PMID38180275
PMCPMC10802935
OpenAlexW4390616127

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.