Evidence map›Paper›PMID 38179947›Full record

ArticleJournal of virology2024

Ten-eleven translocation (Tet) methylcytosine dioxygenase-dependent viral DNA demethylation mediates

Rachel Matrenec, Claudia E Oropeza, Eddie Dekoven, Grant Tarnow, Mark Maienschein-Cline, Cecilia S Chau, Stefan J Green, Alan McLachlan

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. The role of TET2 in solid tumors and its therapeutic potential: a comprehensive review.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Rachel MatrenecDepartment of Microbiology and Immunology, College of Medicine, University of Illinois, Chicago, Illinois, USA.
Claudia E OropezaDepartment of Microbiology and Immunology, College of Medicine, University of Illinois, Chicago, Illinois, USA.
Eddie DekovenDepartment of Microbiology and Immunology, College of Medicine, University of Illinois, Chicago, Illinois, USA.
Grant TarnowDepartment of Microbiology and Immunology, College of Medicine, University of Illinois, Chicago, Illinois, USA.
Mark Maienschein-ClineResearch Informatics Core, Research Resources Center, University of Illinois, Chicago, Illinois, USA.
Cecilia S ChauGenomics and Microbiome Core Facility, Rush University Medical Center, Chicago, Illinois, USA.
Stefan J GreenGenomics and Microbiome Core Facility, Rush University Medical Center, Chicago, Illinois, USA.
Alan McLachlanDepartment of Microbiology and Immunology, College of Medicine, University of Illinois, Chicago, Illinois, USA.ORCID 0000-0002-4168-2365
University of Illinois Urbana-Champaign · USRush University Medical Center · USUniversity of Illinois Chicago · US

Funding

Strengthening Stakeholder Engagement in Human Research Protections.UL1TR002003 · NCATS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KARNIK, NIRANJAN SUBHASH, MERMELSTEIN, ROBIN J. · 2016 to 2024
$33.7M
Developmental regulation of HBV biosynthesis by FoxA and DNA methylationR01AI125401 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MCLACHLAN, ALAN · 2016 to 2020
$2.0M
Liver lobule zonation, hepatocellular carcinoma (HCC) and β-catenin mediated hepatitis B virus (HBV) biosynthesisR01CA238328 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MCLACHLAN, ALAN · 2020 to 2024
$1.8M
Developmental regulation of HBV biosynthesis by Ten-eleven translocation (Tet) methylcytosine dioxygenasesR01AI170785 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Alan McLachlan · 2023 to 2026
$1.6M
NCATS NIH HHS UL1 TR002003NCATS NIH HHS UL1TR002003NCI NIH HHS R01 CA238328NIAID NIH HHS R01 AI125401NIAID NIH HHS R01 AI170785
6 · The paper itself

Abstract

Liver-specific ten-eleven translocation (Tet) methylcytosine dioxygenases 2 and 3 (Tet2 plus Tet3)-deficient hepatitis B virus (HBV) transgenic mice fail to support viral biosynthesis. The levels of viral transcription and replication intermediates are dramatically reduced. Hepatitis B core antigen is only observed in a very limited number of pericentral hepatocytes in a pattern that is similar to glutamate-ammonia ligase (Glul), a β-catenin target gene. HBV transcript abundance in adult Tet-deficient mice resembles that observed in wild-type neonatal mice. Furthermore, the RNA levels of several β-catenin target genes including Glul, Lhpp, Notun, Oat, Slc1a2, and Tbx3 in Tet-deficient mice were also similar to that observed in wild-type neonatal mice. As HBV transcription is regulated by β-catenin, these findings support the suggestion that neonatal Tet deficiency might limit β-catenin target gene expression, limiting viral biosynthesis. Additionally, HBV transgene DNA displays increased 5-methylcytosine (5mC) frequency at CpG sequences consistent with neonatal Tet deficiency being responsible for decreased developmental viral DNA demethylation mediated by 5mC oxidation to 5-hydroxymethylcytosine, a process that might be responsible for the reduction in cellular β-catenin target gene expression and viral transcription and replication.IMPORTANCEChronic hepatitis B virus (HBV) infection causes significant worldwide morbidity and mortality. There are no curative therapies available to resolve chronic HBV infections, and the small viral genome limits molecular targets for drug development. An alternative approach to drug development is to target cellular genes essential for HBV biosynthesis. In the liver, ten-eleven translocation (Tet) genes encode cellular enzymes that are not essential for postnatal mouse development but represent essential activities for viral DNA demethylation and transcription. Consequently, Tet inhibitors may potentially be developed into therapeutic agents capable of inducing and/or maintaining HBV covalently closed circular DNA methylation, resulting in transcriptional silencing and the resolution of chronic viral infection.

Indexed as

DioxygenasesDNA-Binding ProteinsHepatitis B virusAnimalsbeta CateninDNA DemethylationDNA MethylationDNA, ViralMiceMice, Transgenicbeta CateninDioxygenasesDNA-Binding ProteinsDNA, ViralTet2 protein, mouseTet3 protein, mouseDNA methyltransferase (Dnmt)hepatitis B virus (HBV)ten-eleven translocation (Tet) methylcytosine dioxygenasesviral biosynthesis

Identifiers

PMID38179947
PMCPMC10878274
OpenAlexW4390616944

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.