Evidence map›Paper›PMID 38177910›Full record

ArticleEMBO reports2024

Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation.

Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart and 9 more

Open access · hybridAbstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Borja Gomez RamosDepartment of Life Sciences and Medicine (DLSM), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0002-7353-2943
Jochen OhnmachtDepartment of Life Sciences and Medicine (DLSM), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0001-7109-6802
Nikola de LangeLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.
Elena ValceschiniDepartment of Life Sciences and Medicine (DLSM), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0009-0007-9322-6357
Aurélien GinolhacDepartment of Life Sciences and Medicine (DLSM), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0001-7665-9547
Marie CatillonDepartment of Life Sciences and Medicine (DLSM), University of Luxembourg, L-4362, Belvaux, Luxembourg.
Daniele FerranteLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.
Aleksandar RakovicInstitute of Neurogenetics, University of Lübeck, 23538, Lübeck, Germany.
Rashi HalderLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0002-1402-1254
François MassartLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0001-5590-3344
Giuseppe ArenaLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0003-2398-5503
Paul AntonyLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.
Silvia BologninLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.
Christine KleinInstitute of Neurogenetics, University of Lübeck, 23538, Lübeck, Germany.
Roland KrauseLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0001-9938-7126
Marcel H SchulzInstitute for Cardiovascular Regeneration, Goethe University, 60590, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-1252-3656
Thomas SauterDepartment of Life Sciences and Medicine (DLSM), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0001-8225-2954
Rejko KrügerLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0003-4258-6241
Lasse SinkkonenDepartment of Life Sciences and Medicine (DLSM), University of Luxembourg, L-4362, Belvaux, Luxembourg. lasse.sinkkonen@uni.lu.ORCID http://orcid.org/0000-0002-4223-3027
University of Luxembourg · LUUniversity of Lübeck · DECentre Hospitalier de Luxembourg · LUGoethe University Frankfurt · DE

Funding

Deutsche Forschungsgemeinschaft (DFG) FOR 2488Fonds National de la Recherche Luxembourg (FNR) CORE/C21/BM/15850547/PINK1-DiaPDsFonds National de la Recherche Luxembourg (FNR) CORE/C21/DM/15839823/AstragingFonds National de la Recherche Luxembourg (FNR) FNR/NCER13/BM/11264123Fonds National de la Recherche Luxembourg (FNR) FNR/P13/6682797Fonds National de la Recherche Luxembourg (FNR) NCER-PDFonds National de la Recherche Luxembourg (FNR) PRIDE17/12244779/PARK-QC
6 · The paper itself

Abstract

Midbrain dopaminergic neurons (mDANs) control voluntary movement, cognition, and reward behavior under physiological conditions and are implicated in human diseases such as Parkinson's disease (PD). Many transcription factors (TFs) controlling human mDAN differentiation during development have been described, but much of the regulatory landscape remains undefined. Using a tyrosine hydroxylase (TH) human iPSC reporter line, we here generate time series transcriptomic and epigenomic profiles of purified mDANs during differentiation. Integrative analysis predicts novel regulators of mDAN differentiation and super-enhancers are used to identify key TFs. We find LBX1, NHLH1 and NR2F1/2 to promote mDAN differentiation and show that overexpression of either LBX1 or NHLH1 can also improve mDAN specification. A more detailed investigation of TF targets reveals that NHLH1 promotes the induction of neuronal miR-124, LBX1 regulates cholesterol biosynthesis, and NR2F1/2 controls neuronal activity.

Indexed as

Dopaminergic NeuronsInduced Pluripotent Stem CellsBasic Helix-Loop-Helix ProteinsCell DifferentiationHumansMesencephalonMultiomicsTranscription FactorsBasic Helix-Loop-Helix ProteinsNHLH1 protein, humanTranscription FactorsChromatinDopaminergic NeuronsEnhancersMulti-Omics Data IntegrationTranscription Factors

Identifiers

PMID38177910
PMCPMC10897179
OpenAlexW4389935130

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.