Evidence map›Paper›PMID 38177683›Full record

ArticleNature structural & molecular biology2024

PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense.

Yuanyuan Li, Zhangfei Shen, Mengyuan Zhang, Xiao-Yuan Yang, Sean P Cleary, Jiale Xie, Ila A Marathe, Marius Kostelic, Jacelyn Greenwald, Anthony D Rish and 5 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

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  11. Review
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  13. [Research on Bacteriophage Resistance: Coevolutionary Arms Race Between Bacteria and Phages Drives Novel Antibacterial Therapies].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yuanyuan Li *Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, P. R. China.
Zhangfei Shen *Department of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0002-3707-2265
Mengyuan Zhang *Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, P. R. China.
Xiao-Yuan Yang *Department of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0002-9763-1196
Sean P ClearyDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.
Jiale XieDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, USA.
Ila A MaratheDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.
Marius KostelicDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.
Jacelyn GreenwaldDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0009-0005-0002-0284
Anthony D RishDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0002-2789-9699
Vicki H WysockiDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0003-0495-2538
Chong ChenDepartment of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, P. R. China.
Qiang ChenDepartment of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, P. R. China. qiang_chen@scu.edu.cn.ORCID http://orcid.org/0000-0002-2398-4482
Tian-Min FuDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, USA. fu.978@osu.edu.ORCID http://orcid.org/0000-0002-6281-1752
Yamei YuDepartment of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, P. R. China. yamei_yu@scu.edu.cn.ORCID http://orcid.org/0000-0002-4491-3034

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Waters Select Series Cyclic IMS for P41 Native MS Resource Application to Alzheimer's DiseaseP41GM128577 · NIGMS · OHIO STATE UNIVERSITY · PI WYSOCKI, VICKI H. · 2018 to 2022
$7.6M
Native Mass Spectrometry Guided Structural Biology CenterRM1GM149374 · NIGMS · OHIO STATE UNIVERSITY · PI Vicki H. Wysocki · 2023 to 2026
$5.0M
Molecular biophysics predoctoral training at the Ohio State UniversityT32GM144293 · NIGMS · OHIO STATE UNIVERSITY · PI CHARLES E BELL, Ralf A Bundschuh · 2022 to 2026
$1.1M
Molecular Biophysics predoctoral training at The Ohio State UniversityT32GM118291 · NIGMS · OHIO STATE UNIVERSITY · PI BUNDSCHUH, RALF A, KURET, JEFF · 2017 to 2021
$720k
NIGMS NIH HHS P41 GM103310NIGMS NIH HHS P41 GM128577NIGMS NIH HHS RM1 GM149374NIGMS NIH HHS T32 GM118291NIGMS NIH HHS T32 GM144293
6 · The paper itself

Abstract

Escherichia coli Septu system, an anti-phage defense system, comprises two components: PtuA and PtuB. PtuA contains an ATPase domain, while PtuB is predicted to function as a nuclease. Here we show that PtuA and PtuB form a stable complex with a 6:2 stoichiometry. Cryo-electron microscopy structure of PtuAB reveals a distinctive horseshoe-like configuration. PtuA adopts a hexameric arrangement, organized as an asymmetric trimer of dimers, contrasting the ring-like structure by other ATPases. Notably, the three pairs of PtuA dimers assume distinct conformations and fulfill unique roles in recruiting PtuB. Our functional assays have further illuminated the importance of the oligomeric assembly of PtuAB in anti-phage defense. Moreover, we have uncovered that ATP molecules can directly bind to PtuA and inhibit the activities of PtuAB. Together, the assembly and function of the Septu system shed light on understanding other ATPase-containing systems in bacterial immunity.

Indexed as

BacteriophagesInflammasomesAdenosine TriphosphatasesCryoelectron MicroscopyEscherichia coliAdenosine TriphosphatasesInflammasomes

Identifiers

PMID38177683
PMCPMC12318543

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.