Evidence map›Paper›PMID 38177679›Full record

ArticleNature structural & molecular biology2024

The Ruminococcus bromii amylosome protein Sas6 binds single and double helical α-glucan structures in starch.

Amanda L Photenhauer, Rosendo C Villafuerte-Vega, Filipe M Cerqueira, Krista M Armbruster, Filip Mareček, Tiantian Chen, Zdzislaw Wawrzak, Jesse B Hopkins, Craig W Vander Kooi, Štefan Janeček and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  7. mSphere · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Amanda L PhotenhauerDepartment of Microbiology & Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-1553-4772
Rosendo C Villafuerte-VegaDepartment of Chemistry, University of Michigan, Ann Arbor, MI, USA.
Filipe M CerqueiraDepartment of Microbiology & Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Krista M ArmbrusterDepartment of Microbiology & Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Filip MarečekLaboratory of Protein Evolution, Institute of Molecular Biology, Slovak Academy of Sciences, Bratislava, Slovakia.ORCID http://orcid.org/0000-0002-4427-9184
Tiantian ChenDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL, USA.
Zdzislaw WawrzakNorthwestern Synchrotron Research Center-LS-CAT, Northwestern University, Argonne, IL, USA.
Jesse B HopkinsThe Biophysics Collaborative Access Team (BioCAT), Department of Biological, Chemical, and Physical Sciences, Illinois Institute of Technology, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-8554-8072
Craig W Vander KooiDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL, USA.
Štefan JanečekLaboratory of Protein Evolution, Institute of Molecular Biology, Slovak Academy of Sciences, Bratislava, Slovakia.ORCID http://orcid.org/0000-0003-1530-9855
Brandon T RuotoloDepartment of Chemistry, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-6084-2328
Nicole M KoropatkinDepartment of Microbiology & Immunology, University of Michigan Medical School, Ann Arbor, MI, USA. nkoropat@umich.edu.ORCID http://orcid.org/0000-0002-2459-3336
University of Michigan · USSlovak Academy of Sciences · SKUniversity of Florida · USIllinois Institute of Technology · USNorthwestern University · US

Funding

The Biophysics Collaborative Access Team (User Training and Outreach)P30GM138395 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI THOMAS C IRVING · 2021 to 2026
$16.5M
Metabolomics CoreP01HL149633 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LYSSIOTIS, COSTAS ANDREAS · 2020 to 2024
$11.1M
Next-generation Mass Spectrometry Technologies for Integrated Structural Proteomics- RenewalR01GM095832 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RUOTOLO, BRANDON T · 2011 to 2024
$5.8M
Advanced Pixel Array Detector for Time-Resolved SAXS and Fiber DiffractionS10OD018090 · OD · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2014 to 2014
$529k
The role of carbohydrate binding module cooperation in BaAmy7 hydrolysis of resistant starchF31AT011282 · NCCIH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PHOTENHAUER, AMANDA LYNN · 2021 to 2022
$77k
NCCIH NIH HHS F31 AT011282NHLBI NIH HHS P01 HL149633NIGMS NIH HHS P30 GM138395NIGMS NIH HHS R01 GM095832NIH HHS S10 OD018090
6 · The paper itself

Abstract

Resistant starch is a prebiotic accessed by gut bacteria with specialized amylases and starch-binding proteins. The human gut symbiont Ruminococcus bromii expresses Sas6 (Starch Adherence System member 6), which consists of two starch-specific carbohydrate-binding modules from family 26 (RbCBM26) and family 74 (RbCBM74). Here, we present the crystal structures of Sas6 and of RbCBM74 bound with a double helical dimer of maltodecaose. The RbCBM74 starch-binding groove complements the double helical α-glucan geometry of amylopectin, suggesting that this module selects this feature in starch granules. Isothermal titration calorimetry and native mass spectrometry demonstrate that RbCBM74 recognizes longer single and double helical α-glucans, while RbCBM26 binds short maltooligosaccharides. Bioinformatic analysis supports the conservation of the amylopectin-targeting platform in CBM74s from resistant-starch degrading bacteria. Our results suggest that RbCBM74 and RbCBM26 within Sas6 recognize discrete aspects of the starch granule, providing molecular insight into how this structure is accommodated by gut bacteria.

Indexed as

GlucansStarchAmylopectinBacteriaHumansRuminococcusAmylopectinGlucansStarch

Identifiers

PMID38177679
PMCPMC11081458
OpenAlexW4390587692

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.