Evidence map›Paper›PMID 38177348›Full record

ArticleMolecular psychiatry2024

Genetic factors associated with suicidal behaviors and alcohol use disorders in an American Indian population.

Qian Peng, David A Gilder, Rebecca A Bernert, Katherine J Karriker-Jaffe, Cindy L Ehlers

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. The Etiopathogenic Mosaic of Suicidal Behaviour.Behavioral sciences (Basel, Switzerland) · 2025
    Review
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Qian PengDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA. qpeng@scripps.edu.ORCID 0000-0002-2662-3412
David A GilderDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Rebecca A BernertDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Katherine J Karriker-JaffeCenter for Health Behavior and Implementation Science, RTI International, Berkeley, CA, USA.ORCID 0000-0002-2019-0222
Cindy L EhlersDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0002-2717-994X
Scripps Research Institute · USRTI International · USStanford University · US

Funding

Individual and community influences on alcohol use disorders and other mental health behaviors in Mexican AmericansR01AA026248 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI EHLERS, CINDY L · 2018 to 2022
$3.5M
Neural Basis of alcohol/substance use disorders and suicide in American IndiansR01AA027316 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI EHLERS, CINDY L · 2019 to 2023
$3.0M
Identifying specific genetic pathway interactions for drug use and abuse through integrative omicsDP1DA054373 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI PENG, QIAN · 2021 to 2025
$2.7M
Big data analytics for the evaluation of whole genome sequence and transcriptome data in alcohol researchK25AA025095 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI PENG, QIAN · 2016 to 2020
$807k
NIAAA NIH HHS K25 AA025095NIAAA NIH HHS R01 AA026248NIAAA NIH HHS R01 AA027316NIDA NIH HHS DP1 DA054373U.S. Department of Health & Human Services | NIH | National Institute on Alcohol Abuse and Alcoholism (NIAAA) AA025095U.S. Department of Health & Human Services | NIH | National Institute on Alcohol Abuse and Alcoholism (NIAAA) AA026248U.S. Department of Health & Human Services | NIH | National Institute on Alcohol Abuse and Alcoholism (NIAAA) AA027316U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) DA054373
6 · The paper itself

Abstract

American Indians (AI) demonstrate the highest rates of both suicidal behaviors (SB) and alcohol use disorders (AUD) among all ethnic groups in the US. Rates of suicide and AUD vary substantially between tribal groups and across different geographical regions, underscoring a need to delineate more specific risk and resilience factors. Using data from over 740 AI living within eight contiguous reservations, we assessed genetic risk factors for SB by investigating: (1) possible genetic overlap with AUD, and (2) impacts of rare and low-frequency genomic variants. Suicidal behaviors included lifetime history of suicidal thoughts and acts, including verified suicide deaths, scored using a ranking variable for the SB phenotype (range 0-4). We identified five loci significantly associated with SB and AUD, two of which are intergenic and three intronic on genes AACSP1, ANK1, and FBXO11. Nonsynonymous rare and low-frequency mutations in four genes including SERPINF1 (PEDF), ZNF30, CD34, and SLC5A9, and non-intronic rare and low-frequency mutations in genes OPRD1, HSD17B3 and one lincRNA were significantly associated with SB. One identified pathway related to hypoxia-inducible factor (HIF) regulation, whose 83 nonsynonymous rare and low-frequency variants on 10 genes were significantly linked to SB as well. Four additional genes, and two pathways related to vasopressin-regulated water metabolism and cellular hexose transport, also were strongly associated with SB. This study represents the first investigation of genetic factors for SB in an American Indian population that has high risk for suicide. Our study suggests that bivariate association analysis between comorbid disorders can increase statistical power; and rare and low-frequency variant analysis in a high-risk population enabled by whole-genome sequencing has the potential to identify novel genetic factors. Although such findings may be population specific, rare functional mutations relating to PEDF and HIF regulation align with past reports and suggest a biological mechanism for suicide risk and a potential therapeutic target for intervention.

Indexed as

AlcoholismIndians, North AmericanSuicideAdultAgedFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleMiddle AgedPolymorphism, Single NucleotideRisk FactorsSuicidal IdeationSuicide, AttemptedUnited States

Identifiers

PMID38177348
PMCPMC11176067
OpenAlexW4390579762

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.