Evidence map›Paper›PMID 38177162›Full record

ArticleScientific data2024

The 100-protein NMR spectra dataset: A resource for biomolecular NMR data analysis.

Piotr Klukowski, Fred F Damberger, Frédéric H-T Allain, Hideo Iwai, Harindranath Kadavath, Theresa A Ramelot, Gaetano T Montelione, Roland Riek, Peter Güntert

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. The NMR Exchange Format (NEF): Specification and Applications.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Computational and Experimental Approaches and Applications of Biological NMR.Advances in experimental medicine and biology · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Piotr KlukowskiInstitute of Molecular Physical Science, ETH Zurich, 8093, Zurich, Switzerland. piotr.klukowski@phys.chem.ethz.ch.ORCID 0000-0003-1045-3487
Fred F DambergerInstitute of Biochemistry, ETH Zurich, 8093, Zurich, Switzerland.ORCID 0000-0002-8457-3409
Frédéric H-T AllainInstitute of Biochemistry, ETH Zurich, 8093, Zurich, Switzerland.
Hideo IwaiInstitute of Biotechnology, University of Helsinki, 00100, Helsinki, Finland.
Harindranath KadavathInstitute of Molecular Physical Science, ETH Zurich, 8093, Zurich, Switzerland.
Theresa A RamelotDepartment of Chemistry and Chemical Biology, and Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.ORCID 0000-0002-0335-1573
Gaetano T MontelioneDepartment of Chemistry and Chemical Biology, and Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.ORCID 0000-0002-9440-3059
Roland RiekInstitute of Molecular Physical Science, ETH Zurich, 8093, Zurich, Switzerland. roland.riek@phys.chem.ethz.ch.
Peter GüntertInstitute of Molecular Physical Science, ETH Zurich, 8093, Zurich, Switzerland. peter.guentert@phys.chem.ethz.ch.ORCID 0000-0002-2911-7574

Funding

Hybrid Methods for Dynamic Structure Analysis of Proteins from Pathogenic MicroorganismsR35GM141818 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI MONTELIONE, GAETANO T · 2021 to 2025
$3.3M
NIGMS NIH HHS R35 GM141818
6 · The paper itself

Abstract

Multidimensional NMR spectra are the basis for studying proteins by NMR spectroscopy and crucial for the development and evaluation of methods for biomolecular NMR data analysis. Nevertheless, in contrast to derived data such as chemical shift assignments in the BMRB and protein structures in the PDB databases, this primary data is in general not publicly archived. To change this unsatisfactory situation, we present a standardized set of solution NMR data comprising 1329 2-4-dimensional NMR spectra and associated reference (chemical shift assignments, structures) and derived (peak lists, restraints for structure calculation, etc.) annotations. With the 100-protein NMR spectra dataset that was originally compiled for the development of the ARTINA deep learning-based spectra analysis method, 100 protein structures can be reproduced from their original experimental data. The 100-protein NMR spectra dataset is expected to help the development of computational methods for NMR spectroscopy, in particular machine learning approaches, and enable consistent and objective comparisons of these methods.

Indexed as

Magnetic Resonance ImagingProteinsAlgorithmsMagnetic Resonance SpectroscopyNuclear Magnetic Resonance, BiomolecularProteins

Identifiers

PMID38177162
PMCPMC10767026

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.