Evidence map›Paper›PMID 38175691›Full record

ArticleAging2024

Identification of aging-related genes in diagnosing osteoarthritis via integrating bioinformatics analysis and machine learning.

Jian Huang, Jiangfei Zhou, Xiang Xue, Tianming Dai, Weicong Zhu, Songsong Jiao, Hang Wu, Qingqi Meng

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jian HuangGuangzhou Institute of Traumatic Surgery, Guangzhou Red Cross Hospital of Jinan University, Guangzhou 510220, China.
Jiangfei ZhouDepartment of Orthopedics, Guangzhou Red Cross Hospital of Jinan University, Guangzhou 510220, China.
Xiang XueDepartment of Orthopedics, Guangzhou Red Cross Hospital of Jinan University, Guangzhou 510220, China.
Tianming DaiGuangzhou Institute of Traumatic Surgery, Guangzhou Red Cross Hospital of Jinan University, Guangzhou 510220, China.
Weicong ZhuGuangzhou Institute of Traumatic Surgery, Guangzhou Red Cross Hospital of Jinan University, Guangzhou 510220, China.
Songsong JiaoDepartment of Orthopedics, Guangzhou Red Cross Hospital of Jinan University, Guangzhou 510220, China.
Hang WuDepartment of Traumatic Orthopedics, The Central Hospital of Xiaogan, Hubei 432100, China.
Qingqi MengGuangzhou Institute of Traumatic Surgery, Guangzhou Red Cross Hospital of Jinan University, Guangzhou 510220, China.
Jinan University · CNThe Central Hospital of Xiao gan · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOsteoarthritis (OA) is one of the main causes of pain and disability in the world, it may be caused by many factors. Aging plays a significant role in the onset and progression of OA. However, the mechanisms underlying it remain unknown. Our research aimed to uncover the role of aging-related genes in the progression of OA.

methodsIn Human OA datasets and aging-related genes were obtained from the GEO database and the HAGR website, respectively. Bioinformatics methods including Gene Ontology (GO), Kyoto Encyclopedia of Genes Genomes (KEGG) pathway enrichment, and Protein-protein interaction (PPI) network analysis were used to analyze differentially expressed aging-related genes (DEARGs) in the normal control group and the OA group. And then weighted gene coexpression network analysis (WGCNA), the least absolute shrinkage and selection operator (LASSO) regression, and the Random Forest (RF) machine learning algorithms were used to find the hub genes.

resultsFour overlapping hub genes:

conclusionFinally, these four-hub aging-related genes may help us understand the underlying mechanism of aging in osteoarthritis and could be used as possible diagnostic and therapeutic targets.

Indexed as

HMGB2 ProteinOsteoarthritisAgingComputational BiologyHumansMachine LearningHMGB2 Proteinaging-related genesbioinformatics analysismachine learning algorithmsosteoarthritis

Identifiers

PMID38175691
PMCPMC10817387
OpenAlexW4390545073

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.