Evidence map›Paper›PMID 38174441›Full record

ArticlePlant & cell physiology2024

Broad Chain-Length Specificity of the Alkane-Forming Enzymes NoCER1A and NoCER3A/B in Nymphaea odorata.

Hisae Kojima, Kanta Yamamoto, Takamasa Suzuki, Yuri Hayakawa, Tomoko Niwa, Kenro Tokuhiro, Satoshi Katahira, Tetsuya Higashiyama, Sumie Ishiguro

Open access · hybridAbstract read
In one paragraph

Article in Plant & cell physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hisae KojimaTechnical Center, Nagoya University, Nagoya, 464-8601 Japan.
Kanta YamamotoGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601 Japan.
Takamasa SuzukiCollege of Bioscience and Biotechnology, Chubu University, Kasugai, 487-8501 Japan.
Yuri HayakawaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601 Japan.
Tomoko NiwaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601 Japan.
Kenro TokuhiroToyota Central R&D Labs., Inc., Nagakute, 480-1192 Japan.
Satoshi KatahiraToyota Central R&D Labs., Inc., Nagakute, 480-1192 Japan.
Tetsuya HigashiyamaInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, 464-8601 Japan.ORCID 0000-0002-7346-360X
Sumie IshiguroGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601 Japan.ORCID 0000-0002-6160-7434
Nagoya University · JPToyota Central Research and Development Laboratories (Japan) · JPChubu University · JP

Funding

Japan Science and Technology Agency ALCA programJapan Society for the Promotion of Science JP18H00322 JP18K06281 JP19H00302Ministry of Education, Culture, Sports, Science and Technology JP19H05362 JP21H00365
6 · The paper itself

Abstract

Many terrestrial plants produce large quantities of alkanes for use in epicuticular wax and the pollen coat. However, their carbon chains must be long to be useful as fuel or as a petrochemical feedstock. Here, we focus on Nymphaea odorata, which produces relatively short alkanes in its anthers. We identified orthologs of the Arabidopsis alkane biosynthesis genes AtCER1 and AtCER3 in N. odorata and designated them NoCER1A, NoCER3A and NoCER3B. Expression analysis of NoCER1A and NoCER3A/B in Arabidopsis cer mutants revealed that the N. odorata enzymes cooperated with the Arabidopsis enzymes and that the NoCER1A produced shorter alkanes than AtCER1, regardless of which CER3 protein it interacted with. These results indicate that AtCER1 frequently uses a C30 substrate, whereas NoCER1A, NoCER3A/B and AtCER3 react with a broad range of substrate chain lengths. The incorporation of shorter alkanes disturbed the formation of wax crystals required for water-repellent activity in stems, suggesting that chain-length specificity is important for surface cleaning. Moreover, cultured tobacco cells expressing NoCER1A and NoCER3A/B effectively produced C19-C23 alkanes, indicating that the introduction of the two enzymes is sufficient to produce alkanes. Taken together, our findings suggest that these N. odorata enzymes may be useful for the biological production of alkanes of specific lengths. 3D modeling revealed that CER1s and CER3s share a similar structure that consists of N- and C-terminal domains, in which their predicted active sites are respectively located. We predicted the complex structure of both enzymes and found a cavity that connects their active sites.

Indexed as

ArabidopsisArabidopsis ProteinsNymphaeaAlkanesCarbon-Carbon LyasesAlkanesArabidopsis ProteinsAt5g57800 protein, ArabidopsisCarbon-Carbon LyasesAlkane-forming enzymeArabidopsis thalianaCarbon chain lengthNymphaea odorataTobacco BY-2 cell lineWax crystals

Identifiers

PMID38174441
PMCPMC11020225
OpenAlexW4390582316

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.