Evidence map›Paper›PMID 38172862›Full record

ArticleOrphanet journal of rare diseases2024

Evaluation of seegene anyplex MTB/NTM real-time detection assay for diagnosis of tuberculous meningitis.

Verajit Chotmongkol, Seththawut Kosallavat, Kittisak Sawanyawisuth, Sittichai Khamsai, Narongrit Kasemsap, Nisa Vorasoot, Kannikar Kongbunkiat, Somsak Tiamkao, Prajuab Chaimanee

Open access · goldAbstract read
In one paragraph

Article in Orphanet journal of rare diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Verajit ChotmongkolDepartment of Medicine, Faculty of Medicine, Khon Kaen University, 123 Mittraparp Friendship Road, 40002, Khon Kaen, Thailand.
Seththawut KosallavatDepartment of Medicine, Faculty of Medicine, Khon Kaen University, 123 Mittraparp Friendship Road, 40002, Khon Kaen, Thailand.
Kittisak SawanyawisuthDepartment of Medicine, Faculty of Medicine, Khon Kaen University, 123 Mittraparp Friendship Road, 40002, Khon Kaen, Thailand.
Sittichai KhamsaiDepartment of Medicine, Faculty of Medicine, Khon Kaen University, 123 Mittraparp Friendship Road, 40002, Khon Kaen, Thailand. sittichai_k@kkumail.com.ORCID 0000-0002-6052-5621
Narongrit KasemsapDepartment of Medicine, Faculty of Medicine, Khon Kaen University, 123 Mittraparp Friendship Road, 40002, Khon Kaen, Thailand.
Nisa VorasootDepartment of Medicine, Faculty of Medicine, Khon Kaen University, 123 Mittraparp Friendship Road, 40002, Khon Kaen, Thailand.
Kannikar KongbunkiatDepartment of Medicine, Faculty of Medicine, Khon Kaen University, 123 Mittraparp Friendship Road, 40002, Khon Kaen, Thailand.
Somsak TiamkaoDepartment of Medicine, Faculty of Medicine, Khon Kaen University, 123 Mittraparp Friendship Road, 40002, Khon Kaen, Thailand.
Prajuab ChaimaneeClinical Laboratory Section, Srinagarind Hospital, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.
Khon Kaen University · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTuberculous meningitis (TBM) is a common central nervous system infectious disease. Polymerase chain reaction (PCR) assay is a useful method for the rapid diagnosis of TBM. The Seegene Anyplex MTB/NTM real-time detection assay has good sensitivity and specificity for detection of tuberculosis in respiratory specimens, though, data regarding other specimens are lacking. This study aims to define the diagnostic role of Seegene Anyplex MTB/NTM real-time detection assay in TBM in adults.

methodsThis was a retrospective study of 367 adults with symptomatic community acquired meningitis between December 2013 and December 2019. Cerebrospinal fluid (CSF) had been sent for conventional diagnosis, including culture to identify Mycobacterium tuberculosis, and Seegene Anyplex MTB/NTM real-time detection assay. Other diagnostic examinations were performed as necessary.

resultsOf the 367 patients in the study, 37 were diagnosed with TBM (14 with definite TBM and 23 with probable TBM). Between the total TBM cases (n = 37) and non-TBM cases (n = 330), clinical sensitivity was 32.4% and specificity was 100%, the positive predictive value was 100%, and the negative predictive value was 93.0%. Between the definite TBM cases (n = 14) and non-TBM cases (n = 330), clinical sensitivity was 50.0% and specificity was 100%, the positive predictive value was 100%, and the negative predictive value was 97.9%.

conclusionDue to lack of sensitivity, we suggest Seegeen Anyplex MTB/NTM real-time detection assay should not be used to rule out TBM but is useful for definite diagnosis.

Indexed as

Mycobacterium tuberculosisTuberculosis, MeningealAdultHumansReal-Time Polymerase Chain ReactionRetrospective StudiesSensitivity and SpecificityCerebrospinal fluidPolymerase chain reaction (PCR)Seegeen Anyplex MTB/NTM real-time detection assayTuberculous Meningitis

Identifiers

PMID38172862
PMCPMC10765641
OpenAlexW4390545611

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.