Evidence map›Paper›PMID 38172604›Full record

ArticleNature chemical biology2024

The eRF1 degrader SRI-41315 acts as a molecular glue at the ribosomal decoding center.

João P L Coelho, Matthew C J Yip, Keely Oltion, Jack Taunton, Sichen Shao

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Substrate Binding Relieves Autoinhibition of the Mammalian GCN2 Kinase.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Integrated phenotypic screening and chemical proteomics identifies ETF1 ligands that modulate viral translation and replication.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

João P L Coelho *Department of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7366-1614
Matthew C J Yip *Department of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-2505-9987
Keely OltionChemistry and Chemical Biology Graduate Program, University of California San Francisco, San Francisco, CA, USA.
Jack TauntonDepartment of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-9627-5898
Sichen ShaoDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA. sichen_shao@hms.harvard.edu.ORCID http://orcid.org/0000-0003-2679-5537
Harvard University · USUniversity of California, San Francisco · US

Funding

Research Training in Chemistry and Chemical BiologyT32GM145460 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jason E Gestwicki · 2022 to 2026
$3.1M
Decoding ribosome-triggered quality control mechanismsDP2GM137415 · NIGMS · HARVARD MEDICAL SCHOOL · PI SHAO, SICHEN · 2019 to 2019
$2.5M
American Heart Association (American Heart Association, Inc.) 287375208NIGMS NIH HHS DP2 GM137415NIGMS NIH HHS T32 GM145460U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) DP2GM137415
6 · The paper itself

Abstract

Translation termination is an essential cellular process, which is also of therapeutic interest for diseases that manifest from premature stop codons. In eukaryotes, translation termination requires eRF1, which recognizes stop codons, catalyzes the release of nascent proteins from ribosomes and facilitates ribosome recycling. The small molecule SRI-41315 triggers eRF1 degradation and enhances translational readthrough of premature stop codons. However, the mechanism of action of SRI-41315 on eRF1 and translation is not known. Here we report cryo-EM structures showing that SRI-41315 acts as a metal-dependent molecular glue between the N domain of eRF1 responsible for stop codon recognition and the ribosomal subunit interface near the decoding center. Retention of eRF1 on ribosomes by SRI-41315 leads to ribosome collisions, eRF1 ubiquitylation and a higher frequency of translation termination at near-cognate stop codons. Our findings reveal a new mechanism of release factor inhibition and additional implications for pharmacologically targeting eRF1.

Indexed as

Codon, TerminatorPeptide Termination FactorsRibosomesCryoelectron MicroscopyHumansModels, MolecularPeptide Chain Termination, TranslationalProtein BiosynthesisUbiquitinationCodon, TerminatorETF1 protein, humanPeptide Termination Factors

Identifiers

PMID38172604
PMCPMC11253071
OpenAlexW4390544538

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.