Evidence map›Paper›PMID 38172108›Full record

ArticleNature communications2024

Angiogenesis-on-a-chip coupled with single-cell RNA sequencing reveals spatially differential activations of autophagy along angiogenic sprouts.

Somin Lee, Hyunkyung Kim, Bum Suk Kim, Sehyun Chae, Sangmin Jung, Jung Seub Lee, James Yu, Kyungmin Son, Minhwan Chung, Jong Kyoung Kim and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  7. Dual regulation of autophagy: paradoxical effects on tumor angiogenesis.Frontiers in cell and developmental biology · 2026
    Review
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  13. Towards advanced regenerative therapeutics to tackle cardio-cerebrovascular diseases.American heart journal plus : cardiology research and practice · 2025
    Review
  14. Intussusceptive angiogenesis-on-a-chip: Evidence for transluminal vascular bridging by endothelial delamination.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Somin Lee *Interdisciplinary Program for Bioengineering, Seoul National University, Seoul, South Korea.ORCID 0000-0001-9189-0384
Hyunkyung Kim *Department of Biochemistry and Molecular Biology, Korea University College of Medicine, Seoul, South Korea.
Bum Suk Kim *Department of New Biology, DGIST, Daegu, South Korea.ORCID 0000-0001-6528-7354
Sehyun Chae *Neurovascular Unit Research Group, Korea Brain Research Institute, Daegu, South Korea.
Sangmin Jung *Department of Mechanical Engineering, Seoul National University, Seoul, South Korea.
Jung Seub LeeDepartment of Mechanical Engineering, Seoul National University, Seoul, South Korea.
James YuInterdisciplinary Program for Bioengineering, Seoul National University, Seoul, South Korea.ORCID 0000-0001-5906-754X
Kyungmin SonDepartment of Mechanical Engineering, Seoul National University, Seoul, South Korea.
Minhwan ChungDepartment of Mechanical Engineering, Seoul National University, Seoul, South Korea.
Jong Kyoung KimDepartment of New Biology, DGIST, Daegu, South Korea. blkimjk@postech.ac.kr.ORCID 0000-0002-0257-0547
Daehee HwangSchool of Biological Sciences, Seoul National University, Seoul, South Korea. daehee@snu.ac.kr.ORCID 0000-0002-7553-0044
Sung Hee BaekCreative Research Initiatives Center for Epigenetic Code and Diseases, School of Biological Sciences, Seoul National University, Seoul, South Korea. sbaek@snu.ac.kr.ORCID 0000-0002-0588-8243
Noo Li JeonInterdisciplinary Program for Bioengineering, Seoul National University, Seoul, South Korea. njeon@snu.ac.kr.
Seoul National University · KRDaegu Gyeongbuk Institute of Science and Technology · KRHarvard University · USKorea Brain Research Institute · KRKorea University · KRPohang University of Science and Technology · KR

Funding

Ministry of Science, ICT and Future Planning (MSIP) 23-BR-01-02National Research Foundation of Korea (NRF) 2017R1A3B1023387National Research Foundation of Korea (NRF) 2018R1A5A1025511National Research Foundation of Korea (NRF) 2019M3A9B6066967National Research Foundation of Korea (NRF) 2021R1A3B107748National Research Foundation of Korea (NRF) 2022M3A9B6082680
6 · The paper itself

Abstract

Several functions of autophagy associated with proliferation, differentiation, and migration of endothelial cells have been reported. Due to lack of models recapitulating angiogenic sprouting, functional heterogeneity of autophagy in endothelial cells along angiogenic sprouts remains elusive. Here, we apply an angiogenesis-on-a-chip to reconstruct 3D sprouts with clear endpoints. We perform single-cell RNA sequencing of sprouting endothelial cells from our chip to reveal high activation of autophagy in two endothelial cell populations- proliferating endothelial cells in sprout basements and stalk-like endothelial cells near sprout endpoints- and further the reciprocal expression pattern of autophagy-related genes between stalk- and tip-like endothelial cells near sprout endpoints, implying an association of autophagy with tip-stalk cell specification. Our results suggest a model describing spatially differential roles of autophagy: quality control of proliferating endothelial cells in sprout basements for sprout elongation and tip-stalk cell specification near sprout endpoints, which may change strategies for developing autophagy-based anti-angiogenic therapeutics.

Indexed as

Endothelial CellsNeovascularization, PhysiologicAngiogenesisLab-On-A-Chip DevicesSequence Analysis, RNA

Identifiers

PMID38172108
PMCPMC10764361
OpenAlexW4390571016

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.