Evidence map›Paper›PMID 38170979›Full record

ArticleMicrobiology spectrum2024

Prophage enhances the ability of deep-sea bacterium

Xiaoli Tan, Mujie Zhang, Shunzhang Liu, Xiang Xiao, Yu Zhang, Huahua Jian

Abstract read
In one paragraph

Article in Microbiology spectrum, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiaoli Tan *School of Oceanography, Shanghai Jiao Tong University, Shanghai, China.
Mujie Zhang *State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Shunzhang LiuState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Xiang XiaoState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Yu ZhangSchool of Oceanography, Shanghai Jiao Tong University, Shanghai, China.ORCID 0000-0002-0379-7882
Huahua JianState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.ORCID 0000-0001-5507-497X

Funding

MOST | National Key Research and Development Program of China (NKPs) 2021YFF0501302MOST | National Natural Science Foundation of China (NSFC) 41921006MOST | National Natural Science Foundation of China (NSFC) 42122043MOST | National Natural Science Foundation of China (NSFC) 42176095MOST | National Natural Science Foundation of China (NSFC) 92251303Shanghai Pilot Program for Basic Research-Shanghai Jiao Tong University 21TQ1400201The Hainan Provincial Joint Project of Sanya Yazhou Bay Science and Technology City 2021JJLH0057The Oceanic Interdisciplinary Program of Shanghai Jiao Tong University SL2021PT201
6 · The paper itself

Abstract

Prophages are prevalent in the marine bacterial genomes and reshape the physiology and metabolism of their hosts. However, whether and how prophages influence the microbial degradation of D-amino acids (D-AAs), which is one of the widely distributed recalcitrant dissolved organic matters (RDOMs) in the ocean, remain to be explored. In this study, we addressed this issue in a representative marine bacterium,

Indexed as

Ammonium CompoundsShewanellaAmino AcidsGlutamic AcidNitrogenProphagesAmino AcidsAmmonium CompoundsGlutamic AcidNitrogenD-amino aciddeep-sea bacteriumnitrogen metabolismprophageRDOM

Identifiers

PMID38170979
PMCPMC10845958

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.