Evidence map›Paper›PMID 38170905›Full record

ReviewNatural product reports2024

The shikimate pathway: gateway to metabolic diversity.

Vikram V Shende, Katherine D Bauman, Bradley S Moore

Open access · greenAbstract readReview
In one paragraph

Review in Natural product reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
32.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 129 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Starter-Culture-Dependent Effects ofFoods (Basel, Switzerland) · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Calcium regulation ofApplied and environmental microbiology · 2026
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Vikram V ShendeScripps Institution of Oceanography, University of California San Diego, La Jolla, CA, 92093, USA. bsmoore@ucsd.edu.
Katherine D BaumanDepartment of Bioengineering, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0003-1154-8189
Bradley S MooreScripps Institution of Oceanography, University of California San Diego, La Jolla, CA, 92093, USA. bsmoore@ucsd.edu.ORCID 0000-0002-4652-1253
Scripps Institution of Oceanography · USStanford University · US

Funding

Natural Product Genome MiningR01GM085770 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JENSEN, PAUL R, MOORE, BRADLEY S · 2009 to 2024
$5.8M
Salinosporamide Biosynthesis and EngineeringR01CA127622 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MOORE, BRADLEY S · 2007 to 2016
$2.8M
Refactoring Soft Coral Diterpenoid BiosynthesisF32GM145146 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHENDE, VIKRAM VIJAY · 2022 to 2024
$215k
Engineering living medicines: work towards the metabolite rescue of molybdenum cofactor deficiencyF31HD101307 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAUMAN, KATHERINE D · 2020 to 2021
$61k
NCI NIH HHS R01 CA127622NICHD NIH HHS F31 HD101307NIGMS NIH HHS F32 GM145146NIGMS NIH HHS R01 GM085770
6 · The paper itself

Abstract

Covering: 1997 to 2023The shikimate pathway is the metabolic process responsible for the biosynthesis of the aromatic amino acids phenylalanine, tyrosine, and tryptophan. Seven metabolic steps convert phosphoenolpyruvate (PEP) and erythrose 4-phosphate (E4P) into shikimate and ultimately chorismate, which serves as the branch point for dedicated aromatic amino acid biosynthesis. Bacteria, fungi, algae, and plants (yet not animals) biosynthesize chorismate and exploit its intermediates in their specialized metabolism. This review highlights the metabolic diversity derived from intermediates of the shikimate pathway along the seven steps from PEP and E4P to chorismate, as well as additional sections on compounds derived from prephenate, anthranilate and the synonymous aminoshikimate pathway. We discuss the genomic basis and biochemical support leading to shikimate-derived antibiotics, lipids, pigments, cofactors, and other metabolites across the tree of life.

Indexed as

Cyclohexanecarboxylic AcidsCyclohexenesShikimic AcidBacteriaChorismic AcidFungiMolecular StructurePhosphoenolpyruvatePlantsSugar PhosphatesChorismic AcidCyclohexanecarboxylic AcidsCyclohexeneserythrose 4-phosphatePhosphoenolpyruvateprephenic acidshikimateShikimic AcidSugar Phosphates

Identifiers

PMID38170905
PMCPMC11043010
OpenAlexW4390561755

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.