Evidence map›Paper›PMID 38169323›Full record

ArticleThe Journal of infectious diseases2024

The Ability of a 3-Gene Host Signature in Blood to Distinguish Tuberculous Meningitis From Other Brain Infections.

Julie Huynh, Le Hoang Thanh Nhat, Nguyen Le Hoai Bao, Hoang Thanh Hai, Do Dang Anh Thu, Trinh Thi Bich Tram, Vu Thi Mong Dung, Do Dinh Vinh, Nghiem My Ngoc, Joseph Donovan and 10 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Julie HuynhOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.ORCID 0000-0002-9247-4267
Le Hoang Thanh NhatOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nguyen Le Hoai BaoOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Hoang Thanh HaiOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Do Dang Anh ThuOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Trinh Thi Bich TramOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Vu Thi Mong DungOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Do Dinh VinhOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nghiem My NgocOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Joseph DonovanOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nguyen Hoan PhuOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Dang Van ThanhOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nguyen Thi Anh ThuOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nguyen Duc BangPham Ngoc Thach Hospital for Tuberculosis and Lung Disease, Ho Chi Minh City, Vietnam.
Dang Thi Minh HaPham Ngoc Thach Hospital for Tuberculosis and Lung Disease, Ho Chi Minh City, Vietnam.
Ho Dang Trung NghiaOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Le Van TanOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Le Hong VanOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Guy ThwaitesOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nguyen Thuy Thuong ThuongOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.ORCID 0000-0001-8733-692X

Funding

Wellcome TrustWellcome Trust 206724/Z/17/ZWellcome Trust Investigator
6 · The paper itself

Abstract

backgroundTuberculous meningitis (TBM) is difficult to diagnose. We investigated whether a 3-gene host response signature in blood can distinguish TBM from other brain infections.

methodsThe expression of 3 genes (dual specificity phosphatase 3 [DUSP3], guanylate-binding protein [GBP5], krupple-like factor 2 [KLF2]) was analyzed by RNA sequencing of archived whole blood from 4 cohorts of Vietnamese adults: 281 with TBM, 279 with pulmonary tuberculosis, 50 with other brain infections, and 30 healthy controls. Tuberculosis scores (combined 3-gene expression) were calculated following published methodology and discriminatory performance compared using area under a receiver operator characteristic curve (AUC).

resultsGBP5 was upregulated in TBM compared to other brain infections (P < .001), with no difference in DUSP3 and KLF2 expression. The diagnostic performance of GBP5 alone (AUC, 0.74; 95% confidence interval [CI], .67-.81) was slightly better than the 3-gene tuberculosis score (AUC, 0.66; 95% CI, .58-.73) in TBM. Both GBP5 expression and tuberculosis score were higher in participants with human immunodeficiency virus (HIV; P < .001), with good diagnostic performance of GBP5 alone (AUC, 0.86; 95% CI, .80-.93).

conclusionsThe 3-gene host signature in whole blood has the ability to discriminate TBM from other brain infections, including in individuals with HIV. Validation in large prospective diagnostic study is now required.

Indexed as

Tuberculosis, MeningealAdultBiomarkersDiagnosis, DifferentialFemaleGTP-Binding ProteinsHumansKruppel-Like Transcription FactorsMaleMiddle AgedROC CurveTuberculosis, PulmonaryVietnamYoung AdultBiomarkersGBP5 protein, humanGTP-Binding ProteinsKruppel-Like Transcription Factors3-gene host responsebrain infectionsdiagnosisHIV coinfectiontuberculous meningitis

Identifiers

PMID38169323
PMCPMC11326836

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.