Evidence map›Paper›PMID 38168632›Full record

ArticleCommunications biology2024

Multiple reaction monitoring assays for large-scale quantitation of proteins from 20 mouse organs and tissues.

Sarah A Michaud, Helena Pětrošová, Nicholas J Sinclair, Andrea L Kinnear, Angela M Jackson, Jamie C McGuire, Darryl B Hardie, Pallab Bhowmick, Milan Ganguly, Ann M Flenniken and 7 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Sarah A MichaudUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada. sarah@proteincentre.com.ORCID 0000-0001-7243-9168
Helena PětrošováUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.
Nicholas J SinclairUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.
Andrea L KinnearUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.
Angela M JacksonUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.
Jamie C McGuireUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.
Darryl B HardieUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.ORCID 0000-0003-4309-6586
Pallab BhowmickUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.ORCID 0000-0001-7267-8601
Milan GangulyThe Center for Phenogenomics, Toronto, ON, Canada.
Ann M FlennikenThe Center for Phenogenomics, Toronto, ON, Canada.ORCID 0000-0003-1892-6154
Lauryl M J NutterThe Center for Phenogenomics, Toronto, ON, Canada.ORCID 0000-0001-9619-146X
Colin McKerlieThe Hospital for Sick Children, Toronto, ON, Canada.
Derek SmithUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.
Yassene MohammedCenter for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, the Netherlands.
David SchibliUniversity of Victoria-Genome British Columbia Proteomics Centre, Victoria, BC, Canada.
Albert SickmannLeibniz-Institut für Analytische Wissenschaften-ISAS-e.V, Dortmund, 44139, Germany.
Christoph H BorchersSegal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, QC, Canada. christoph.borchers@mcgill.ca.ORCID 0000-0003-2394-6512
University of Victoria · CAHospital for Sick Children · CAJewish General Hospital · CALeibniz Institute for Analytical Sciences - ISAS · DELeiden University Medical Center · NLLunenfeld-Tanenbaum Research Institute · CA

Funding

Genome Canada (Génome Canada) 204PROGenome Canada (Génome Canada) 214PROGenome Canada (Génome Canada) 234DMPGenome Canada (Génome Canada) 264PROGenome Canada (Génome Canada) 282PQPJewish General Hospital (Hôpital Général Juif) Alvin Segal Family FoundationJewish General Hospital (Hôpital Général Juif) Warren Y. Soper Charitable TrustMcGill University (McGill) Segal McGill Chair in Molecular Oncology
6 · The paper itself

Abstract

Mouse is the mammalian model of choice to study human health and disease due to its size, ease of breeding and the natural occurrence of conditions mimicking human pathology. Here we design and validate multiple reaction monitoring mass spectrometry (MRM-MS) assays for quantitation of 2118 unique proteins in 20 murine tissues and organs. We provide open access to technical aspects of these assays to enable their implementation in other laboratories, and demonstrate their suitability for proteomic profiling in mice by measuring normal protein abundances in tissues from three mouse strains: C57BL/6NCrl, NOD/SCID, and BALB/cAnNCrl. Sex- and strain-specific differences in protein abundances are identified and described, and the measured values are freely accessible via our MouseQuaPro database: http://mousequapro.proteincentre.com . Together, this large library of quantitative MRM-MS assays established in mice and the measured baseline protein abundances represent an important resource for research involving mouse models.

Indexed as

ProteinsProteomicsAnimalsHumansMammalsMiceMice, Inbred C57BLMice, Inbred NODMice, SCIDProteins

Identifiers

PMID38168632
PMCPMC10762018
OpenAlexW4390495577

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.