Evidence map›Paper›PMID 38168500›Full record

ArticleClinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology2024

Design of an Ara h 2 hypoallergen from conformational epitopes.

Jungki Min, Tarun Keswani, Nicole A LaHood, Isabelle R Lytle, Orlee Marini-Rapoport, Léna Andrieux, Sunny L Sneed, Lori L Edwards, Robert M Petrovich, Lalith Perera and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Structural determinants of peanut-induced anaphylaxis.The Journal of allergy and clinical immunology · 2025
    Article
  8. Article
  9. Impact of recombinant expression inFrontiers in immunology · 2025
    Article
  10. Review
  11. Review
  12. Neutralizing IgGThe Journal of allergy and clinical immunology · 2024
    Article
  13. Origins and diversity of pan-isotype human bone marrow plasma cells.bioRxiv : the preprint server for biology · 2024
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Jungki MinGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, Durham, North Carolina, USA.ORCID 0000-0003-1860-3064
Tarun KeswaniCenter for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Nicole A LaHoodCenter for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Isabelle R LytleGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, Durham, North Carolina, USA.
Orlee Marini-RapoportCenter for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Léna AndrieuxCenter for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.ORCID 0009-0005-7664-0527
Sunny L SneedCenter for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Lori L EdwardsGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, Durham, North Carolina, USA.
Robert M PetrovichGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, Durham, North Carolina, USA.
Lalith PereraGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, Durham, North Carolina, USA.
Anna PomésInbio, Charlottesville, Virginia, USA.ORCID 0000-0002-8729-1829
Lars C PedersenGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, Durham, North Carolina, USA.
Sarita U PatilCenter for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Geoffrey A MuellerGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, Durham, North Carolina, USA.ORCID 0000-0001-8361-5323
National Institute of Environmental Health Sciences · USHarvard University · USCharlottesville Medical Research · USUniversité Claude Bernard Lyon 1 · FR

Funding

Protein Expression FacilityZICES102487 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI PETROVICH, ROBERT · 2009 to 2025
$23.9M
Crystallographic studies of macromolecular structuresZICES102645 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI PEDERSEN, LARS · 2018 to 2025
$12.6M
Structural and Functional Characterization of AllergensZIAES102906 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI MUELLER, GEOFFREY · 2010 to 2025
$10.0M
Antigenic determinants of asthma-associated allergens for design of immunotherapy.R01AI077653 · NIAID · INDOOR BIOTECHNOLOGIES · PI MARTIN D. CHAPMAN, Maksymilian Chruszcz · 2009 to 2026
$9.5M
Macromolecular ModelingZICES043010 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI COPELAND, WILLIAM · 2012 to 2025
$5.7M
Structural and functional characterization of protective antibodies induced in peanut oral immunotherapyR01AI155630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Sarita U Patil · 2021 to 2026
$3.1M
MACROMOLECULAR MODELING AND CARCINOGENESISZ01ES043010 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI DARDEN, THOMAS A · 1986 to 2008
$1.2M
Intramural NIH HHS Z01 ES043010Intramural NIH HHS ZIA ES102885Intramural NIH HHS ZIC ES043010Intramural NIH HHS ZIC ES102645NIAID NIH HHS R01 AI077653NIAID NIH HHS R01 AI155630NIEHS NIH HHS
6 · The paper itself

Abstract

introductionAdverse reactions are relatively common during peanut oral immunotherapy. To reduce the risk to the patient, some researchers have proposed modifying the allergen to reduce IgE reactivity, creating a putative hypoallergen. Analysis of recently cloned human IgG from patients treated with peanut immunotherapy suggested that there are three common conformational epitopes for the major peanut allergen Ara h 2. We sought to test if structural information on these epitopes could indicate mutagenesis targets for designing a hypoallergen and evaluated the reduction in IgE binding via immunochemistry and a mouse model of passive cutaneous anaphylaxis (PCA).

methodsX-ray crystallography characterized the conformational epitopes in detail, followed by mutational analysis of key residues to modify monoclonal antibody (mAb) and serum IgE binding, assessed by ELISA and biolayer interferometry. A designed Ara h 2 hypoallergen was tested for reduced vascularization in mouse PCA experiments using pooled peanut allergic patient serum.

resultsA ternary crystal structure of Ara h 2 in complex with patient antibodies 13T1 and 13T5 was determined. Site-specific mutants were designed that reduced 13T1, 13T5, and 22S1 mAbs binding by orders of magnitude. By combining designed mutations from the three major conformational bins, a hexamutant (Ara h 2 E46R, E89R, E97R, E114R, Q146A, R147E) was created that reduced IgE binding in serum from allergic patients. Further, in the PCA model where mice were primed with peanut allergic patient serum, reactivity upon allergen challenge was significantly decreased using the hexamutant.

conclusionThese studies demonstrate that prior knowledge of common conformational epitopes can be used to engineer reduced IgE reactivity, an important first step in hypoallergen design.

Indexed as

HypersensitivityPeanut Hypersensitivity2S Albumins, PlantAllergensAmino Acid SequenceAnimalsAntigens, PlantArachisEpitopesHumansImmunoglobulin EMice2S Albumins, PlantAllergensAntigens, PlantEpitopesImmunoglobulin EallergenAra h 2hypoallergenpeanutstructure

Identifiers

PMID38168500
PMCPMC10843581
OpenAlexW4390541610

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.