Evidence map›Paper›PMID 38168219›Full record

ArticlebioRxiv : the preprint server for biology2023

The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples.

Nikita Vladimirov, Fabian F Voigt, Thomas Naert, Gabriela R Araujo, Ruiyao Cai, Anna Maria Reuss, Shan Zhao, Patricia Schmid, Sven Hildebrand, Martina Schaettin and 13 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Nikita VladimirovBrain Research Institute, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-1159-0689
Fabian F VoigtBrain Research Institute, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-7108-2176
Thomas NaertInstitute of Anatomy and Zurich Kidney Center (ZKC), University of Zurich, Zurich, Switzerland.ORCID 0000-0003-3543-2519
Gabriela R AraujoDepartment of Physics, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-4456-0774
Ruiyao CaiPresent address: Department of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-3050-8863
Anna Maria ReussNeuroscience Center Zurich, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-1096-3030
Shan ZhaoDepartment of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-1778-9381
Patricia SchmidInstitute of Anatomy and Zurich Kidney Center (ZKC), University of Zurich, Zurich, Switzerland.
Sven HildebrandDepartment of Cognitive Neuroscience, Faculty of Psychology & Neuroscience, Maastricht University, Maastricht, the Netherlands.ORCID 0000-0003-3783-8213
Martina SchaettinNeuroscience Center Zurich, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-1487-6324
Dominik GroosBrain Research Institute, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-1178-1354
José María MateosCenter for Microscopy and Image Analysis (ZMB), University of Zurich, Zurich, Switzerland.ORCID 0000-0002-3675-6198
Philipp BethgeBrain Research Institute, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-4022-0844
Taiyo YamamotoInstitute of Anatomy and Zurich Kidney Center (ZKC), University of Zurich, Zurich, Switzerland.ORCID 0000-0002-0305-8465
Valentino AerneDepartment of Physics, University of Zurich, Zurich, Switzerland.
Alard RoebroeckDepartment of Cognitive Neuroscience, Faculty of Psychology & Neuroscience, Maastricht University, Maastricht, the Netherlands.ORCID 0000-0003-0895-1145
Ali ErtürkInstitute for Tissue Engineering and Regenerative Medicine (iTERM), Helmholtz Center Munich, Neuherberg, Germany.ORCID 0000-0001-5163-5100
Adriano AguzziNeuroscience Center Zurich, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-0344-6708
Urs ZieglerCenter for Microscopy and Image Analysis (ZMB), University of Zurich, Zurich, Switzerland.ORCID 0000-0001-7860-1867
Esther StoeckliUniversity Research Priority Program (URPP) Adaptive Brain Circuits in Development and Learning (AdaBD), University of Zurich, Zurich, Switzerland.ORCID 0000-0002-8485-0648
Laura BaudisDepartment of Physics, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-4710-1768
Soeren S LienkampInstitute of Anatomy and Zurich Kidney Center (ZKC), University of Zurich, Zurich, Switzerland.ORCID 0000-0003-2963-6865
Fritjof HelmchenBrain Research Institute, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-8867-9569

Funding

Multi-area two-photon microscopy for revealing long-distance communication between multiple local brain circuitsU01NS090475 · NINDS · UNIVERSITY OF ZURICH · PI HELMCHEN, FRITJOF · 2014 to 2016
$798k
NINDS NIH HHS U01 NS090475
6 · The paper itself

Abstract

In 2015, we launched the mesoSPIM initiative (www.mesospim.org), an open-source project for making light-sheet microscopy of large cleared tissues more accessible. Meanwhile, the demand for imaging larger samples at higher speed and resolution has increased, requiring major improvements in the capabilities of light-sheet microscopy. Here, we introduce the next-generation mesoSPIM ("Benchtop") with significantly increased field of view, improved resolution, higher throughput, more affordable cost and simpler assembly compared to the original version. We developed a new method for testing objectives, enabling us to select detection objectives optimal for light-sheet imaging with large-sensor sCMOS cameras. The new mesoSPIM achieves high spatial resolution (1.5 μm laterally, 3.3 μm axially) across the entire field of view, a magnification up to 20x, and supports sample sizes ranging from sub-mm up to several centimetres, while being compatible with multiple clearing techniques. The new microscope serves a broad range of applications in neuroscience, developmental biology, and even physics.

Identifiers

PMID38168219
PMCPMC10760166

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.