Evidence map›Paper›PMID 38168095›Full record

Observational studyNature communications2024

The antibiotic resistance reservoir of the lung microbiome expands with age in a population of critically ill patients.

Victoria T Chu, Alexandra Tsitsiklis, Eran Mick, Lilliam Ambroggio, Katrina L Kalantar, Abigail Glascock, Christina M Osborne, Brandie D Wagner, Michael A Matthay, Joseph L DeRisi and 3 more

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Victoria T ChuDivision of Infectious Diseases & Global Health, University of California, San Francisco, CA, USA.ORCID 0000-0002-7480-965X
Alexandra TsitsiklisDivision of Infectious Diseases, University of California, San Francisco, CA, USA.
Eran MickDivision of Infectious Diseases, University of California, San Francisco, CA, USA.ORCID 0000-0002-7299-808X
Lilliam AmbroggioDepartment of Pediatrics, University of Colorado and Children's Hospital Colorado, Aurora, CO, USA.
Katrina L KalantarChan Zuckerberg Initiative, San Francisco, CA, USA.
Abigail GlascockChan Zuckerberg Biohub, San Francisco, CA, USA.
Christina M OsborneDepartment of Pediatrics, University of Colorado and Children's Hospital Colorado, Aurora, CO, USA.
Brandie D WagnerDepartment of Pediatrics, University of Colorado and Children's Hospital Colorado, Aurora, CO, USA.
Michael A MatthayDivision of Pulmonary and Critical Care Medicine, Cardiovascular Research Institute, University of California, San Francisco, CA, USA.ORCID 0000-0003-3039-8155
Joseph L DeRisiChan Zuckerberg Biohub, San Francisco, CA, USA.
Carolyn S CalfeeDivision of Pulmonary and Critical Care Medicine, Cardiovascular Research Institute, University of California, San Francisco, CA, USA.
Peter M MouraniArkansas Children's Research Institute, Arkansas Children's Hospital, Little Rock, AR, USA.ORCID 0000-0002-1829-3775
Charles R LangelierDivision of Infectious Diseases, University of California, San Francisco, CA, USA. chaz.langelier@ucsf.edu.ORCID 0000-0002-6708-4646
University of California, San Francisco · USChan Zuckerberg Initiative (United States) · USChildren's Hospital Colorado · USArkansas Children's Hospital · USColorado School of Public Health · US

Funding

BIOLOGY OF INFECTIOUS DISEASES TRAINING PROGRAMT32AI007641 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MATTHEW G DORSEY · 2000 to 2026
$6.9M
Precision Medicine in the Acute Respiratory Distress SyndromeR35HL140026 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CALFEE, CAROLYN · 2018 to 2024
$6.8M
The Microbiome, Virome and Host Responses Preceding Ventilator-Associated PneumonR01HL124103 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI MOURANI, PETER M, SONTAG, MARCI K · 2014 to 2017
$2.7M
Integrated Host/Microbe Metagenomics to Improve Lower Respiratory Tract Infection Diagnosis in Critically Ill ChildrenR01HL155418 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LANGELIER, CHARLES · 2021 to 2024
$1.6M
Integrated Host/Microbe (IHM) Metagenomics of the Lower Airway to Diagnose PediatricRespiratory Infections, Identify Etiologic Pathogens, and Predict OutcomesR01AI182308 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Charles Langelier, Peter Michael Mourani · 2025 to 2026
$1.6M
Profiling the Lung Transcriptome for Precision Diagnosis of Respiratory Infections using Host/Pathogen Metagenomic SequencingK23HL138461 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LANGELIER, CHARLES · 2018 to 2021
$718k
NHLBI NIH HHS K23 HL138461NHLBI NIH HHS R01 HL124103NHLBI NIH HHS R01 HL155418NHLBI NIH HHS R35 HL140026NIAID NIH HHS R01 AI182308NIAID NIH HHS T32 AI007641
6 · The paper itself

Abstract

Antimicrobial resistant lower respiratory tract infections are an increasing public health threat and an important cause of global mortality. The lung microbiome can influence susceptibility of respiratory tract infections and represents an important reservoir for exchange of antimicrobial resistance genes. Studies of the gut microbiome have found an association between age and increasing antimicrobial resistance gene burden, however, corollary studies in the lung microbiome remain absent. We performed an observational study of children and adults with acute respiratory failure admitted to the intensive care unit. From tracheal aspirate RNA sequencing data, we evaluated age-related differences in detectable antimicrobial resistance gene expression in the lung microbiome. Using a multivariable logistic regression model, we find that detection of antimicrobial resistance gene expression was significantly higher in adults compared with children after adjusting for demographic and clinical characteristics. This association remained significant after additionally adjusting for lung bacterial microbiome characteristics, and when modeling age as a continuous variable. The proportion of adults expressing beta-lactam, aminoglycoside, and tetracycline antimicrobial resistance genes was higher compared to children. Together, these findings shape our understanding of the lung resistome in critically ill patients across the lifespan, which may have implications for clinical management and global public health.

Indexed as

MicrobiotaRespiratory Tract InfectionsAdultAnti-Bacterial AgentsChildCritical IllnessDrug Resistance, MicrobialHumansLungAnti-Bacterial Agents

Identifiers

PMID38168095
PMCPMC10762195
OpenAlexW4390499546

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.