Evidence map›Paper›PMID 38168042›Full record

ArticleNature communications2024

Microbial co-occurrences on catheters from long-term catheterized patients.

Taylor M Nye, Zongsen Zou, Chloe L P Obernuefemann, Jerome S Pinkner, Erin Lowry, Kent Kleinschmidt, Karla Bergeron, Aleksandra Klim, Karen W Dodson, Ana L Flores-Mireles and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
24.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Microenvironment shapesiScience · 2026
    Article
  3. mBio · 2026
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  4. Review
  5. Article
  6. The unique Efg1 fungal virulence regulon in the catheterized bladder environment.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  8. Pangenome analysis ofAntimicrobial agents and chemotherapy · 2026
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  10. L-Fucose-Dependent Biofilm Formation bybioRxiv : the preprint server for biology · 2026
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  11. Review
  12. Journal of bacteriology · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Chondroitin sulfate degradation bolstersbioRxiv : the preprint server for biology · 2026
    Article
  17. Article
  18. Article
  19. A quorum-sensing molecule fromProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Taylor M Nye *Department of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA.ORCID 0000-0003-4695-0485
Zongsen Zou *Department of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA.
Chloe L P ObernuefemannDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA.
Jerome S PinknerDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA.
Erin LowryDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA.
Kent KleinschmidtDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA.
Karla BergeronDepartment of Surgery, Division of Urologic Surgery, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Aleksandra KlimDepartment of Surgery, Division of Urologic Surgery, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Karen W DodsonDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA.
Ana L Flores-MirelesDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN, 46556, USA.ORCID 0000-0003-4610-4246
Jennifer N WalkerDepartment of Microbiology and Molecular Genetics, McGovern Medical School, The University of Texas Health Science Center, Houston, TX, 77030, USA.ORCID 0000-0002-0079-3261
Daniel Garrett WongDepartment of Surgery, Division of Urologic Surgery, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Alana DesaiDepartment of Surgery, Division of Urologic Surgery, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Michael G CaparonDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA. caparon@wustl.edu.
Scott J HultgrenDepartment of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, Saint Louis, MO, 63110-1093, USA. hultgren@wustl.edu.ORCID 0000-0001-8785-564X
Washington University in St. Louis · USThe University of Texas Health Science Center at Houston · USUniversity of Notre Dame · US

Funding

Infectious Diseases/Basic Microbial Pathogenic MechanismsT32AI007172 · NIAID · WASHINGTON UNIVERSITY · PI Daniel E. Goldberg, JENNIFER A PHILIPS · 1985 to 2026
$13.0M
MOLECULAR BASIS OF E. COLI ADHESINS IN BLADDER DISORDERSR01DK051406 · NIDDK · WASHINGTON UNIVERSITY · PI SCOTT J. HULTGREN · 1997 to 2026
$8.8M
Understanding the role of catheter-associated protein deposition in the development of CAUTIR01DK128805 · NIDDK · UNIVERSITY OF NOTRE DAME · PI FLORES-MIRELES, ANA LIDIA, HOWELL, CAITLIN L · 2021 to 2025
$1.9M
Defining Host-pathogen Interactions in CAUTI to Guide Novel Drug DevelopmentK01DK128381 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Jennifer Nicole Walker · 2022 to 2026
$691k
NIAID NIH HHS T32 AI007172NIDDK NIH HHS K01 DK128381NIDDK NIH HHS R01 DK051406NIDDK NIH HHS R01 DK128805
6 · The paper itself

Abstract

Catheter-associated urinary tract infections (CAUTIs), a common cause of healthcare-associated infections, are caused by a diverse array of pathogens that are increasingly becoming antibiotic resistant. We analyze the microbial occurrences in catheter and urine samples from 55 human long-term catheterized patients collected over one year. Although most of these patients were prescribed antibiotics over several collection periods, their catheter samples remain colonized by one or more bacterial species. Examination of a total of 366 catheter and urine samples identify 13 positive and 13 negative genus co-occurrences over 12 collection periods, representing associations that occur more or less frequently than expected by chance. We find that for many patients, the microbial species composition between collection periods is similar. In a subset of patients, we find that the most frequently sampled bacteria, Escherichia coli and Enterococcus faecalis, co-localize on catheter samples. Further, co-culture of paired isolates recovered from the same patients reveals that E. coli significantly augments E. faecalis growth in an artificial urine medium, where E. faecalis monoculture grows poorly. These findings suggest novel strategies to collapse polymicrobial CAUTI in long-term catheterized patients by targeting mechanisms that promote positive co-associations.

Indexed as

Catheter-Related InfectionsUrinary Tract InfectionsBacteriaCathetersEnterococcus faecalisEscherichia coliHumans

Identifiers

PMID38168042
PMCPMC10762172
OpenAlexW4390508864

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.