Evidence map›Paper›PMID 38167847›Full record

ArticleScientific reports2024

Interactions between the AraC/XylS-like transcriptional activator InvF of Salmonella Typhimurium, the RNA polymerase alpha subunit and the chaperone SicA.

Daniel Cortés-Avalos, André Borges Farias, Luis E Romero-González, Cristina Lara-Ochoa, Lourdes Villa-Tanaca, Francisco García-Del Portillo, Vanessa López-Guerrero, Víctor H Bustamante, Ernesto Pérez-Rueda, J Antonio Ibarra

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Daniel Cortés-AvalosLaboratorio de Genética Microbiana, Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional. Prol. Carpio y Plan de Ayala S/N, Col. Santo Tomás 11340, Mexico City, Mexico.
André Borges FariasInstituto de Investigaciones en Matemáticas Aplicadas y en Sistemas, Universidad Nacional Autónoma de México, Unidad Académica del Estado de Yucatán, Mérida, Mexico.
Luis E Romero-GonzálezLaboratorio de Genética Microbiana, Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional. Prol. Carpio y Plan de Ayala S/N, Col. Santo Tomás 11340, Mexico City, Mexico.
Cristina Lara-OchoaCentro de Detección Biomolecular, Benemérita Universidad Autónoma de Puebla, Puebla, Mexico.
Lourdes Villa-TanacaLaboratorio de Genética Microbiana, Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional. Prol. Carpio y Plan de Ayala S/N, Col. Santo Tomás 11340, Mexico City, Mexico.
Francisco García-Del PortilloLaboratory of Intracellular Bacterial Pathogens, National Centre for Biotechnology (CNB)-CSIC, Darwin, 3, 28049, Madrid, Spain.
Vanessa López-GuerreroFacultad de Medicina, Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos, Mexico.
Víctor H BustamanteDepartamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico.
Ernesto Pérez-RuedaInstituto de Investigaciones en Matemáticas Aplicadas y en Sistemas, Universidad Nacional Autónoma de México, Unidad Académica del Estado de Yucatán, Mérida, Mexico.
J Antonio IbarraLaboratorio de Genética Microbiana, Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional. Prol. Carpio y Plan de Ayala S/N, Col. Santo Tomás 11340, Mexico City, Mexico. jaig19@gmail.com.
Instituto Politécnico Nacional · MXUniversidad Nacional Autónoma de México · MXBenemérita Universidad Autónoma de Puebla · MXCentro Nacional de Biotecnología · ESUniversidad Autónoma del Estado de Morelos · MX

Funding

CONAHCYT 320012CONAHCYT A1-S-25438DGAPA-PAPIIT IN-220523Secretaría de Investigación y Posgrado, Instituto Politécnico Nacional 20230850Secretaría de Investigación y Posgrado, Instituto Politécnico Nacional 20232722
6 · The paper itself

Abstract

Salmonella enterica serovar Typhimurium causes gastroenteritis and systemic infections in humans. For this bacterium the expression of a type III secretion system (T3SS) and effector proteins encoded in the Salmonella pathogenicity island-1 (SPI-1), is keystone for the virulence of this bacterium. Expression of these is controlled by a regulatory cascade starting with the transcriptional regulators HilD, HilC and RtsA that induce the expression of HilA, which then activates expression of the regulator InvF, a transcriptional regulator of the AraC/XylS family. InvF needs to interact with the chaperone SicA to activate transcription of SPI-1 genes including sicA, sopB, sptP, sopE, sopE2, and STM1239. InvF very likely acts as a classical activator; however, whether InvF interacts with the RNA polymerase alpha subunit RpoA has not been determined. Results from this study confirm the interaction between InvF with SicA and reveal that both proteins interact with the RNAP alpha subunit. Thus, our study further supports that the InvF/SicA complex acts as a classical activator. Additionally, we showed for the first time an interaction between a chaperone of T3SS effectors (SicA) and the RNAP.

Indexed as

DNA-Binding ProteinsSalmonella typhimuriumBacterial ProteinsDNA-Directed RNA PolymerasesGene Expression Regulation, BacterialHumansMolecular ChaperonesTrans-ActivatorsTranscription FactorsBacterial ProteinsDNA-Binding ProteinsDNA-Directed RNA PolymerasesMolecular ChaperonesRNA polymerase alpha subunitTrans-ActivatorsTranscription Factors

Identifiers

PMID38167847
PMCPMC10761746
OpenAlexW4390500241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.