Evidence map›Paper›PMID 38167449›Full record

ArticleScientific reports2024

A novel automated label data extraction and data base generation system from herbarium specimen images using OCR and NER.

Atsuko Takano, Theodor C H Cole, Hajime Konagai

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Atsuko TakanoInstitute of Natural Science and Environment, University of Hyogo/The Museum of Nature and Human Activities, Hyogo, 6 Chome, Yayoigaoka, Sanda, Hyogo, 669-1546, Japan. takano@hitohaku.jp.
Theodor C H ColeInstitute of Biology, Dahlem Center of Plant Sciences, Freie Universität Berlin, Altensteinstrasse 6, 14195, Berlin, Germany.
Hajime KonagaiFunctions Tales, Shimogamo-Honmachi 19-1-101, Sakyo-ku, Kyoto, 606-0862, Japan.

Funding

Japan Society for the Promotion of Science 19K06832
6 · The paper itself

Abstract

Digital extraction of label data from natural history specimens along with more efficient procedures of data entry and processing is essential for improving documentation and global information availability. Herbaria have made great advances in this direction lately. In this study, using optical character recognition (OCR) and named entity recognition (NER) techniques, we have been able to make further advancements towards fully automatic extraction of label data from herbarium specimen images. This system can be developed and run on a consumer grade desktop computer with standard specifications, and can also be applied to extracting label data from diverse kinds of natural history specimens, such as those in entomological collections. This system can facilitate the digitization and publication of natural history museum specimens around the world.

Indexed as

DocumentationMuseumsDatabases, FactualEntomology

Identifiers

PMID38167449
PMCPMC10761843

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.